Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02640 166 / 5e-47 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G49360 111 / 7e-28 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT3G19620 87 / 2e-19 Glycosyl hydrolase family protein (.1) AT5G64570 82 / 6e-18 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 80 / 4e-17 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G10560 77 / 4e-16 Glycosyl hydrolase family protein (.1) AT1G78060 73 / 1e-14 Glycosyl hydrolase family protein (.1) AT5G09700 71 / 4e-14 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010015 [exp] 288 / 2e-92 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10016858 [exp] 122 / 1e-31 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10020966 [exp] 87 / 3e-19 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10004271 [exp] 82 / 1e-17 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 72 / 3e-14 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10022374 [exp] 71 / 6e-14 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 70 / 1e-13 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 66 / 3e-12 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10002128 [exp] 44 / 8e-06 AT3G19620 108 / 2e-38 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197200 [exp] 196 / 3e-58 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 190 / 5e-56 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 149 / 5e-41 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 139 / 1e-37 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.001G206800 [exp] 90 / 2e-20 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.003G022900 [exp] 89 / 2e-20 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.007G114300 [exp] 87 / 2e-19 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G294700 [exp] 82 / 1e-17 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G094000 [exp] 72 / 3e-14 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 68 / 4e-13 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025036 pacid=23148414 polypeptide=Lus10025036 locus=Lus10025036.g ID=Lus10025036.BGIv1.0 annot-version=v1.0 ATGGAGGACACATTCAACGTGCCATTCAAAATGTGCGTTAAAAACGGCAACGTAGCCAGCGTAATGTGTTCTTACAACCAAGTCAGCGGGATCCCGACCT GCGCCGATCCAAACCTCCTCCGCAAAACCGTTCGGGGCCAGTGGGACCTGGACGGCTACATTTTGATCGACGGCGGAGCTGCTATTGCTGATATATTGTT TCGCACCACAAATCCAGGGGGTAAGCTGCCAATGACGTGGTCCAATGGTGTACCGATTTGGTCACGGTCTAAGAACATCGCAACCGCTCCAACCACGGTC CAGGTCCCACTCCACGGCCATCGCAACCCAAACAACACCGTATTGAACAAGGCGATCAAGGTTACACACGTTAGGTGCGGTAAGCTCTCGATAGGAATTG AAGCGGACGTGAAGAACACAGGTCGTGTAGATGGAACTCACACATTATTGATCTACTCATCGTCGCCACATGCCTTGACAGCCAAAGGATGGGCGCCTCA CAAGCAGTTGATAGCCTTCCGCAAGGTGCACTTGGCAGCGCGTGCCGGACAACGAGTGAAGGTTAACATCCATGTGTGCAAGTACCTAAGCGTCGTTGAT AGGGTTGGTACTCGGCGAATTCCGATGGGTACACATAGTATCCACGTCGGAAATGTCGAGCATCGGGTTTCGCTCCAAGCGATAACGCTTGGAGTGATCA AGACTTAG
AA sequence Show only first row Show all	>Lus10025036 pacid=23148414 polypeptide=Lus10025036 locus=Lus10025036.g ID=Lus10025036.BGIv1.0 annot-version=v1.0 MEDTFNVPFKMCVKNGNVASVMCSYNQVSGIPTCADPNLLRKTVRGQWDLDGYILIDGGAAIADILFRTTNPGGKLPMTWSNGVPIWSRSKNIATAPTTV QVPLHGHRNPNNTVLNKAIKVTHVRCGKLSIGIEADVKNTGRVDGTHTLLIYSSSPHALTAKGWAPHKQLIAFRKVHLAARAGQRVKVNIHVCKYLSVVD RVGTRRIPMGTHSIHVGNVEHRVSLQAITLGVIKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09730		ATBXL3, XYL3, B...	beta-xylosidase 3 (.1)		Lus10025036 [exp]	0	1
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	3.2	0.9118
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	4.4	0.9151
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	4.5	0.9048
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10003569 [exp]	6.3	0.8307
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	6.9	0.8990
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Lus10022256 [exp]	10.4	0.7963
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	12.2	0.9043
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020604 [exp]	14.2	0.8885
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	15.4	0.9078
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	15.8	0.8794

Compare expression of checked genes

Lus10025036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.