Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62580 317 / 4e-111 Late embryogenesis abundant protein (LEA) family protein (.1) AT1G72100 70 / 7e-14 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT1G22600 59 / 5e-10 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010016 [exp] 392 / 5e-141 AT3G62580 340 / 3e-120 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10041310 [exp] 67 / 3e-13 AT1G72100 144 / 9e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10000723 [exp] 63 / 2e-11 AT1G72100 305 / 3e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10021473 [exp] 61 / 1e-10 AT1G72100 305 / 2e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10037401 [exp] 58 / 4e-10 AT1G72100 127 / 5e-34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197800 [exp] 343 / 1e-121 AT3G62580 352 / 6e-125 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025037 pacid=23148454 polypeptide=Lus10025037 locus=Lus10025037.g ID=Lus10025037.BGIv1.0 annot-version=v1.0 ATGTGTTGGCTGAGCCGATTCCTTGTGGCCGTCGCTTTCCTAGCCGTCGGCGTTGTCTTCTCCCCTGAGACCTTCGGATCATCCAATTCCGTCAAGCAGC TCTCTACCTACCTCAAGCTCGCTCACCTCCTCGCCTTCTCCACCGCCTTTGGCGCCGCTCTATGGGTCACCTTCATCGGCGGCATCATCATGTTCAAGAA CCTTCCGAGACACCAATTTGGTAACCTGCAGAGCAAGATGTTTCCTGCTTACTTCTCCATGGTTGGAGTTTGCTGCGCCATCTCGGTAGCTGCTTTCGGC TACCTCAACCCTTGGCAATCAGCTTCCACTGCTGAGAGATATCAGCTAGGGTTTCTGTTATCTTCCTTTGCTTTCAACCTCTGCAATTTGTTCGTCTTCA CTCCCATGACCGTCCAGATGATGAAGCAAAGGCACAAGGTAGAGCGAGAGTTGAACATCGGGGAAGAAGTAGGATGGTCGAAGAACTTGAAAGTTGCAAA GAGTGATCCTAAGCTCGCTTCGATGAACAAGAAATTCGGCATGATCCACGGACTCTCGTCGCTTGCTAACATCATGTCCTTTGGTGGCCTCGCCATCCAT TCTTGGTACTTGGCAGGTAAGTTGAATCTGTAA
AA sequence Show only first row Show all	>Lus10025037 pacid=23148454 polypeptide=Lus10025037 locus=Lus10025037.g ID=Lus10025037.BGIv1.0 annot-version=v1.0 MCWLSRFLVAVAFLAVGVVFSPETFGSSNSVKQLSTYLKLAHLLAFSTAFGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSMVGVCCAISVAAFG YLNPWQSASTAERYQLGFLLSSFAFNLCNLFVFTPMTVQMMKQRHKVERELNIGEEVGWSKNLKVAKSDPKLASMNKKFGMIHGLSSLANIMSFGGLAIH SWYLAGKLNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	1.0	0.8633
AT1G28280			VQ motif-containing protein (....		Lus10015315 [exp]	4.9	0.7952
AT4G10810			unknown protein		Lus10023038 [exp]	6.9	0.8457
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10041182 [exp]	7.1	0.8017
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	7.5	0.8444
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	7.7	0.8165
AT1G24620			EF hand calcium-binding protei...		Lus10004330 [exp]	7.9	0.8035
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	8.0	0.8317
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10020589 [exp]	9.2	0.7903
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000097 [exp]	16.3	0.7935

Compare expression of checked genes

Lus10025037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.