Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02110 368 / 2e-109 transcription coactivators (.1) AT4G21070 50 / 6e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT2G41450 45 / 0.0003 N-acetyltransferases;N-acetyltransferases (.1.2) AT1G04020 45 / 0.0003 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010017 [exp] 1718 / 0 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10001455 [exp] 860 / 0 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10002432 [exp] 293 / 1e-91 AT4G02110 240 / 7e-72 transcription coactivators (.1) Lus10002431 [exp] 281 / 7e-84 AT4G02110 184 / 2e-49 transcription coactivators (.1) Lus10034088 [exp] 56 / 2e-07 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122400 [exp] 425 / 5e-131 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.002G197400 [exp] 413 / 3e-127 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.005G182500 [exp] 48 / 4e-05 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.001G358100 [exp] 45 / 0.0003 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.002G259000 [exp] 44 / 0.0004 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10025038 pacid=23148468 polypeptide=Lus10025038 locus=Lus10025038.g ID=Lus10025038.BGIv1.0 annot-version=v1.0 ATGCAGGAAACGACGACGAGTTCAACCGCGAAGCCGTTCCTCGGCGTCCGCTTTCTCCTATCTGGCTTCGATTCTCCCAACGCGGAACAGGTTCGATCCA AGATTTTGAGATGTGGCGGAGATGAGAGCCATGATTATACTCATTTGATAGTTGACAACACTGTTTACGATGATCCGATGTGTGTTTCCGCTAGAGACAA CGGGAAAACAGTGGTTACAGGGTTATGGATCGACCACTGTCTCGATACTGGTTTGGCTGTTGATCCGACTTCTATAATGTATCAGCCACCAAAAGATTTT AATGGAATACCAGGTGCTAAGAATCTCGTTATTTGCTTGACTGGTTACCAGCGTCAAGATAGAGAAGACATTATGACTATGGTCCGCCTCCTGGGTGAGA AGTATGAGCTTGCACGTAGGATGCAGAAGATAAAGCTTGTCAATCATCGTTGGTTAGAAGATTGCTTGAAGAATTGGAAGCTTCTCCCAGAGGACGAATA TAATAACAGTGGCTACGAGTTAGAGATGATGGACGCCGAAGCAGGTGATTCTGAAGATGATATGGTTGAAACCTCTCCCAAACCGTCTGCTATCCTTGTT ACAAGCAAGAGCCCACAGATTACGAAAACCGGACCTCCAATGACTTGTGACTTGTCGAAATCAACTTCTGAACTTTCTACTATGCAGAATGTGCCTGAAG TTCTCTCTACAGTCCCCAATGCTGAGAATGTGTTGATAGCTCCTGTCAGTAATGTTCAAGGTCGTGTTTCTGACTCGATTGCTGGTCCATCAGAGAGAAC TCCAGGTTCTGCAAAGGCTGGTTGTTGGAAAGTTGTCTCGGTTTCTGGAAGTGTTAGGAAGCCTTCACCTTCCACTTTGAAGTTAACCGCTCTAAGTTAC TCGAGGAAAAATTCGCCGTCTTCACTTTCTGCTGCAGCTTCAAATTTTCTTGGACGCTCTCCAAAAGTAAAAACAGGAGAACCCACGAAGGTCTCTTCTG TTGAGGTTGAAGATGCTAATGGAAGATGTGTCTCTGATTTTGGAACTTCCGAAAAGTTACTTTCCATAGAGGCATCGGATGGTAACAAGCAAGAGATAAT TGCTTTGAAGTCAAGCACCAAAAGTCATGATAGACAAGCTTATGTCACGGAAAGTTCATCAGTTTTACTCAACAAGTTACCTGATGGAGATCCTGTTCCC TTCAGTAATAGTATGGCGAGTCCAATTGCAGCGTCGAATTCCAACAGCAACTCTTCTGAAGCTGAAACCTTGAAAGAGAAATCACTTGCAAATGGCGGAA ACACCTTGCATGAAACAGAAACCCAAGGGGCTGATTTAAAGCGTCAATCTTCTTTATGTGAATCGAAAGAGTCAAACTCACCATGCAACCAAGACAGTGG TGATCTTAGTGCAGAGAAATCCAGACTTGATGCCGACCTTGGCAATCGTCAAGGAGTTGACTCATTGGCAACTAAGGCAGTACTTACTACGTTGGATATG GAACAGAGGCAGGATGGCGGTTTGCATCCCAAACAAGTAAAGAAGCACATTGCAACAAAGAAAACGTTGAGATCTAGACTGAAAGTAGGAAGAACTGCAA AGAACAAAGGTTCTGTTCATTTGAAAGAAAGTGCTGTCCAGGAAGATATGGCTATGTCCAATGAACTTGAGAACAAAGTTTCCTGTGTTGCTCCTCCACT GGAGGATGTGGAAAGAGAACTGGCTCTTGATGATCTAAGGAGTGATCTCGAGCTTAACACTGGCTTTATGGATGATGCAAGTGATCCAAAAAAGAATGAT GCAGAAGGTCCTGGTGGTAATAGGACGAAGAAGAGTAAAGGCCAGGGTCGTCAACCATTAAGCAAGAGCAAGAGAACAAAAGTTTCTACTGCTGATGATA AATCAAACTCCAGCCACTCTATCCAGACAGAAGAGACTCATCTTCGCACTGTTAATCAAGTTGCATTGCGAAACCTGACAAATCGTCCTGACAGCAAGAA GAAGAAACTATCTAGGAAAAGGCCACAGAGCTCCATGGAGCCAGACAAAGAAAACAACCTAATTATGGATGGGGAAGTTATAAATGGTGAAGAGAGAAGG GAACCAATGTGCTTTATATTGAGTGGGGCGAGACTACAGAGGAAGGAGTTTCAGCAGGTTATAAAACGATTGAAGGGGAAATCCTGCAAAGATTCTCACC AATGGTCATACCAGGCAACTCATTTCATTGCTCCTGATCCAATCCGCAGAACAGAAAAGTTCTTCGCTGCTTCTGCCTCTGGAAGCTGGATTCTCAAGCC AGAATATCTGTCCGCATGCAATCAAGCAGGAAAATTTCTTCCCGTGGAGCCTTATGAGCTGCATATGAATGGCCTCAGTGAAGATGGAGCTGTAAACTTG GAGGCTCCAAGGAAATGGCGACTGTTGAGAGAGAGAACAGGTCATGGAGCGTTTTATGGTATGCGGATTGTCGTTTATGGCCAGTGCATTGCGCCACCTT TGGACACGCTGAAACGGGTAGTGAAGGCGGGAGACGGAACCATAGTAGCGACATCGCCGCCATACGACCGGTTCCTGGTCTCCGGTGGAGTGGATTACGC CGTCGTGGGCCCTGGAATCACCAGCGCTGACGTGTGGATCCAGGAGTTTCTAAGGCATGAGATCCCTTGCGTAGCAAGTGATTACATGGTGGAGTACGTG TGCAAGTCCGGATACTCTCTGGACAAACACGTGCTCTACAATACTCGGAAGTGGGCTGAGAAGTCTTTTGCCAAGTTGTCGAGCAAAGCGGAGGAGGTGA TCGCCGTAGTCGGTCAGGACGTTTTGCCATCGTCCCCGGGGAAAGTAGTCTGA
AA sequence Show only first row Show all	>Lus10025038 pacid=23148468 polypeptide=Lus10025038 locus=Lus10025038.g ID=Lus10025038.BGIv1.0 annot-version=v1.0 MQETTTSSTAKPFLGVRFLLSGFDSPNAEQVRSKILRCGGDESHDYTHLIVDNTVYDDPMCVSARDNGKTVVTGLWIDHCLDTGLAVDPTSIMYQPPKDF NGIPGAKNLVICLTGYQRQDREDIMTMVRLLGEKYELARRMQKIKLVNHRWLEDCLKNWKLLPEDEYNNSGYELEMMDAEAGDSEDDMVETSPKPSAILV TSKSPQITKTGPPMTCDLSKSTSELSTMQNVPEVLSTVPNAENVLIAPVSNVQGRVSDSIAGPSERTPGSAKAGCWKVVSVSGSVRKPSPSTLKLTALSY SRKNSPSSLSAAASNFLGRSPKVKTGEPTKVSSVEVEDANGRCVSDFGTSEKLLSIEASDGNKQEIIALKSSTKSHDRQAYVTESSSVLLNKLPDGDPVP FSNSMASPIAASNSNSNSSEAETLKEKSLANGGNTLHETETQGADLKRQSSLCESKESNSPCNQDSGDLSAEKSRLDADLGNRQGVDSLATKAVLTTLDM EQRQDGGLHPKQVKKHIATKKTLRSRLKVGRTAKNKGSVHLKESAVQEDMAMSNELENKVSCVAPPLEDVERELALDDLRSDLELNTGFMDDASDPKKND AEGPGGNRTKKSKGQGRQPLSKSKRTKVSTADDKSNSSHSIQTEETHLRTVNQVALRNLTNRPDSKKKKLSRKRPQSSMEPDKENNLIMDGEVINGEERR EPMCFILSGARLQRKEFQQVIKRLKGKSCKDSHQWSYQATHFIAPDPIRRTEKFFAASASGSWILKPEYLSACNQAGKFLPVEPYELHMNGLSEDGAVNL EAPRKWRLLRERTGHGAFYGMRIVVYGQCIAPPLDTLKRVVKAGDGTIVATSPPYDRFLVSGGVDYAVVGPGITSADVWIQEFLRHEIPCVASDYMVEYV CKSGYSLDKHVLYNTRKWAEKSFAKLSSKAEEVIAVVGQDVLPSSPGKVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02110			transcription coactivators (.1...		Lus10025038 [exp]	0	1
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	4.9	0.9200
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	6.6	0.9091
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	14.2	0.9062
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	15.9	0.9055
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	16.0	0.9050
AT5G01660			unknown protein		Lus10012220 [exp]	16.1	0.9023
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036453 [exp]	23.2	0.8381
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	23.3	0.8983
AT1G50660			unknown protein		Lus10021521 [exp]	24.2	0.8927
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	27.7	0.9036

Compare expression of checked genes

Lus10025038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.