Plant FIBer expression Database

Lus10025039 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61710 51 / 2e-08 unknown protein
AT4G02160 46 / 1e-06 unknown protein
AT5G38700 40 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010018
[exp]
213 / 3e-72 AT4G02160 43 / 7e-06 unknown protein
Lus10010019
[exp]
39 / 0.0004 AT5G38700 164 / 8e-52 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G199100
[exp]
92 / 9e-24 AT4G02160 50 / 9e-08 unknown protein
Potri.014G123500
[exp]
71 / 1e-15 AT5G61710 42 / 6e-05 unknown protein
PFAM info
Representative CDS sequence
>Lus10025039 pacid=23148416 polypeptide=Lus10025039 locus=Lus10025039.g ID=Lus10025039.BGIv1.0 annot-version=v1.0
ATGAAGAACAAGATCAGAGGTCCAATGCAGCTGATCAAGGTCGCTCTGTACATGATCACCAACAAATCCGGCGAAGGAAAACCATCGTCCGCTGCCGCCA
GGTGGAAGAAAATTTTCGGCCTTGTTCAGCCGCTGCACCTCGAGAGCCGTGAACAGTTATCAACATCATTGCCACCGCCGGTACCCTGCATCGAGGCGCC
GCAGCGGGATCCGGAAGGGGATCGAGCGTTAGTGTCGCCGTTGGCGTCACCGGCGGTGATGACGCCGTACGCCTCGGCGGAAAATCTGCTGGATCTGGAC
AATCCAGAGGAGAATGATCAGGAAGAGGAGAAGGACAATTACTACGACGGAATCGAAGGCGACGAGATGATCGATACAAAGGCGGAGGAATTCATCGCCC
GATTTTATCAACAGATGATGCTCCAAGACGAGACCGGAACGACGTCATAA
AA sequence
>Lus10025039 pacid=23148416 polypeptide=Lus10025039 locus=Lus10025039.g ID=Lus10025039.BGIv1.0 annot-version=v1.0
MKNKIRGPMQLIKVALYMITNKSGEGKPSSAAARWKKIFGLVQPLHLESREQLSTSLPPPVPCIEAPQRDPEGDRALVSPLASPAVMTPYASAENLLDLD
NPEENDQEEEKDNYYDGIEGDEMIDTKAEEFIARFYQQMMLQDETGTTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G61710 unknown protein Lus10025039
[exp]
0 1
AT5G09500 Ribosomal protein S19 family p... Lus10007469
[exp]
7.5 0.6414
AT1G61110 NAC ANAC025 NAC domain containing protein ... Lus10003847
[exp]
36.4 0.5374
AT2G02450 NAC LOV1, ANAC034, ... LONG VEGETATIVE PHASE 1, Arabi... Lus10003366
[exp]
44.4 0.5492
AT4G17905 ATL4H RING/U-box superfamily protein... Lus10025338
[exp]
46.3 0.5645
AT3G51520 diacylglycerol acyltransferase... Lus10039136
[exp]
47.3 0.5499
AT1G13560 AAPT1, ATAAPT1 aminoalcoholphosphotransferase... Lus10002042
[exp]
53.0 0.5142
Lus10032733
[exp]
70.7 0.5337
AT5G47670 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6"... Lus10028845
[exp]
107.4 0.4938
AT1G33540 SCPL18 serine carboxypeptidase-like 1... Lus10011710
[exp]
112.6 0.5268
AT2G16910 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic hel... Lus10042395
[exp]
126.3 0.4958

Lus10025039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.