Plant FIBer expression Database

Lus10025041 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38700 140 / 2e-42 unknown protein
AT4G02170 122 / 1e-35 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010019
[exp]
281 / 3e-98 AT5G38700 164 / 8e-52 unknown protein
Lus10001456
[exp]
150 / 2e-46 AT5G38700 132 / 4e-39 unknown protein
Lus10002433
[exp]
56 / 2e-10 AT5G38700 69 / 7e-16 unknown protein
Lus10025828
[exp]
40 / 0.0005 AT1G52140 138 / 8e-41 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G198800
[exp]
159 / 6e-50 AT5G38700 157 / 3e-49 unknown protein
Potri.014G123400
[exp]
158 / 2e-49 AT5G38700 144 / 4e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10025041 pacid=23148440 polypeptide=Lus10025041 locus=Lus10025041.g ID=Lus10025041.BGIv1.0 annot-version=v1.0
ATGGCAAGGAAACATAACAATGTGAGTCGACGAGCATGGAACATCCTCCGGCTAGCATTGCTATGGTCCAGAAAGGGCGGTGTGTTCAAGAGACAGTTGA
TGGTTGACCTCCGATTAGTCCCCAAGTTCATCAAGAGGTTAGCGCCTAATTCTTCTTCTTCGGGTCCTCGTAGCCAAATTGGCTTCTATGGCGAAAGGGA
ACTCTCATTCAACAAGACACCTCTTTTCCAGGTGAAGATGCACCGCCCTGCTTCGATGCGATTCATCATCCCTTGCATTACTCCGCAGCAGGCTGACTTG
GACAACGATTTCGACGAGTTTTGCAACCGGCAGTATGGTGATGACGAGGATAAGCCTTCCACTACTAGCAGCTTCACTGAACACAGCGATGATGAAGATG
ATATCGAAGAAGAGGAATGCGTGAACGAGGATGAGGAAAGTGAAGGGATTGACTTGAAAGCTGAGAAGTTCATAGCTCAGTTCTATGAACAGATGAAACT
GCAAAGACAGATATCATATCTGGAATACAAAAAGTGA
AA sequence
>Lus10025041 pacid=23148440 polypeptide=Lus10025041 locus=Lus10025041.g ID=Lus10025041.BGIv1.0 annot-version=v1.0
MARKHNNVSRRAWNILRLALLWSRKGGVFKRQLMVDLRLVPKFIKRLAPNSSSSGPRSQIGFYGERELSFNKTPLFQVKMHRPASMRFIIPCITPQQADL
DNDFDEFCNRQYGDDEDKPSTTSSFTEHSDDEDDIEEEECVNEDEESEGIDLKAEKFIAQFYEQMKLQRQISYLEYKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38700 unknown protein Lus10025041
[exp]
0 1
AT5G32450 RNA binding (RRM/RBD/RNP motif... Lus10013651
[exp]
2.0 0.7924
AT1G20540 Transducin/WD40 repeat-like su... Lus10034576
[exp]
6.5 0.7469
AT3G03800 ATSYP131, SYP13... syntaxin of plants 131 (.1) Lus10010655
[exp]
9.1 0.8001
AT5G03040 IQD2 IQ-domain 2 (.1.2.3) Lus10019916
[exp]
10.4 0.7586
AT2G25290 Phox1 Phox1, Octicosapeptide/Phox/Be... Lus10001927
[exp]
13.6 0.7553
AT4G26510 UKL4 uridine kinase-like 4 (.1.2) Lus10021310
[exp]
19.6 0.7061
AT5G38790 unknown protein Lus10003044
[exp]
20.2 0.7313
AT1G07540 MYB TRFL2 TRF-like 2 (.1) Lus10040795
[exp]
20.6 0.7564
AT2G15220 Plant basic secretory protein ... Lus10014106
[exp]
23.4 0.7031
Lus10005948
[exp]
33.8 0.6952

Lus10025041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.