Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02120 217 / 1e-68 CTP synthase family protein (.1) AT3G12670 206 / 4e-64 EMB2742 embryo defective 2742, CTP synthase family protein (.1) AT1G30820 204 / 1e-63 CTP synthase family protein (.1) AT4G20320 192 / 9e-59 CTP synthase family protein (.1.2) AT2G34890 190 / 4e-58 CTP synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010020 [exp] 160 / 1e-47 AT4G02120 624 / 0.0 CTP synthase family protein (.1) Lus10001218 [exp] 152 / 7e-44 AT1G30820 894 / 0.0 CTP synthase family protein (.1) Lus10038403 [exp] 152 / 8e-44 AT1G30820 897 / 0.0 CTP synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G123200 [exp] 226 / 3e-71 AT4G02120 918 / 0.0 CTP synthase family protein (.1) Potri.008G080100 [exp] 211 / 4e-66 AT3G12670 929 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.010G176500 [exp] 211 / 4e-66 AT3G12670 935 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.001G073100 [exp] 211 / 1e-65 AT1G30820 901 / 0.0 CTP synthase family protein (.1) Potri.003G157900 [exp] 210 / 2e-65 AT1G30820 910 / 0.0 CTP synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06418 [flax] [poplar] CTP_synth_N CTP synthase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10025043 pacid=23148447 polypeptide=Lus10025043 locus=Lus10025043.g ID=Lus10025043.BGIv1.0 annot-version=v1.0 ATGGAAGCTGAAAGGAAGATGAAGTACGTGCTGGTGAGCGGAGGTGTTGTCAGTGGCCTTGGCAAGGGCGTCACAGCTAGCAGCGTCGGCGTCGTCCTCA AAGCTTGCGGCCTTGGTGTCACCTCCATCAAAATAGATCCTTACTTGAATACTGATGCTGGTACCATGTCTCCTTTTGAGCACGGGGAGGTTTTTGTTCT TGATGACGGCGGAGAGGTTGACTTGGATTTGGGTAACTACGAGCGTTTCCTCGATGTGACACTCACCAAAGACAATAACATCACAACTGGGAAGATATTT CAGTCTGTTATTGAGAAGGAAAGGAGAGGGGATTATCTTGGAAAGACTGTTCAGGTGGTACCTCACGTCACTGATGCCATCAGGAACTGGATTGAGTCAG TTGCTACGATTCCTGTAGAGGGGAAGGAAGGCCCTGCTGACGTATGTGTGATAGAATTGGGAGGAACTGTGGGCGAGTCCTGA
AA sequence Show only first row Show all	>Lus10025043 pacid=23148447 polypeptide=Lus10025043 locus=Lus10025043.g ID=Lus10025043.BGIv1.0 annot-version=v1.0 MEAERKMKYVLVSGGVVSGLGKGVTASSVGVVLKACGLGVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVTLTKDNNITTGKIF QSVIEKERRGDYLGKTVQVVPHVTDAIRNWIESVATIPVEGKEGPADVCVIELGGTVGES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	0	1
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	4.0	0.9131
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	5.2	0.9041
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10008515 [exp]	6.5	0.8851
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	6.6	0.8986
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	6.9	0.9161
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	7.9	0.8515
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	9.9	0.8851
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	10.4	0.8867
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	11.5	0.8504
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	11.8	0.8790

Compare expression of checked genes

Lus10025043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.