Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16120 650 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 627 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 620 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 568 / 0 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 560 / 0 COBL11 COBRA-like protein 11 precursor (.1) AT1G09790 124 / 5e-30 COBL6 COBRA-like protein 6 precursor (.1) AT5G15630 114 / 5e-27 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 111 / 6e-26 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 105 / 6e-24 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 105 / 7e-24 COBL1 COBRA-like protein 1 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010022 [exp] 1019 / 0 AT4G16120 581 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10016847 [exp] 675 / 0 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10037720 [exp] 669 / 0 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10011160 [exp] 575 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10043065 [exp] 571 / 0 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1) Lus10010023 [exp] 139 / 7e-38 AT4G16120 87 / 2e-20 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10007986 [exp] 113 / 3e-26 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10042386 [exp] 112 / 3e-26 AT3G29810 367 / 2e-124 COBRA-like protein 2 precursor (.1) Lus10021144 [exp] 112 / 3e-26 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001100 [exp] 703 / 0 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.014G125300 [exp] 676 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.011G135200 [exp] 601 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.001G419000 [exp] 590 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Potri.004G117200 [exp] 120 / 7e-29 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 115 / 2e-27 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.015G060100 [exp] 109 / 3e-25 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 107 / 2e-24 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1) Potri.012G062200 [exp] 107 / 2e-24 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 106 / 3e-24 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10025045 pacid=23148422 polypeptide=Lus10025045 locus=Lus10025045.g ID=Lus10025045.BGIv1.0 annot-version=v1.0 ATGGCGAAATCCCACGGCGGCGGAGCAACAAACTCCTCTGTTTTTTCGATTCCACTACTAATCACTCTCTTCTTCCTCTTCCTTGTCTCCACATCACTCG CCCAGCCCACACCTTCCCCGCCGCTTCCCCCTCCACCGATCACTCAAAAAACATCCTGCTCCGGCGTATTCGTTGCCTACGCCACTGACGGCGGCGGATT CGCGATCCCGCCGAACGACCCTTCCAACCAGGCGTACCGATTCTCCTCGACCCTAACCGTCGCCAACAACGGCCGCACCGAGCTCAAGGCGTGGCGGGTT TTCGTCGGATTCCAATTTGACGAGCTGCTGGTCTCCGCTGACAAGGTCGTGCTCGCCGACGCGACTCCGCTCCCTGCTGCGGTGGGGAACGGCACCGTTT TTGCCGGTTCGTCTCATCCCGATTTGAAGACCGCGATTCAGACCGCTGGGGATGCTACCCAGATGGAGGTTCAGGTTCAGTTGGTTGGTACTAGGTTTGG GCCGCCGCCGAATGCTACTAATTTTTTACCGTTGCCGGCCAATGTGTCGCTGAGTAATGACGGATATTTTTGTCCTGACTCCAGAGTCGAAGGGAACATG AGATGGACATGTTGTGAAAGAAGAAACACACCAACTAACTCCCCACCAAACCAAGCTCCGCAATCCAACTTCCCACCTGCGCAACCAGCCGACTTGTCCA TAACCTACGACGTCCTAAACACATACGACACCGACTACTGGGCACAAGTCACAATCTCCAACAGCCATCCACTAGCTCGGCTCGACAACTGGCAGCTGAG TTGGGATTGGACGAGGGACGAGTTCATCTTCGCCATGAAGGGCGCTTATCCTCTGTCTCTCGACACATCGGAGTGCATATTCGGCTCCCAGGGCCAGCAC TACCTGAAAATGGATTTCTCCCAGGCGCTGAACTGTCAGAGGAGGCCTACTGTCGTCGACTTGCCCCGAGAGAGGGCGAACGATACGGAGATCGGGAGGA TCCCGTTCTGTTGCAGGAACGGGACCATTTTGCCTCCGGTTATGGATTCGAGTAAGGCCACATCGATCTTCCTGATGCATGTGTTCAAGATGCCGCCAGA CTTGAACAGGACCGAATTTGTTGTGCCGCAAGGTTGGAGGATTGGTACTGGTGGTAGCTTGAGCTCTGATTTCCAGTGTGGTTCTCCTGTTCAGGTGAGT CCAACCCAGTTCCCGGATCCAAGCGGATTACCATCTACGAGAACAGCAGTGGCAACATGGCGAATCGCTTGCAACGTCGTTACCAAACCGAAAGAAGAAA ACCCGAAATGTTGCGTCTCGTTCTCAGCTTTCTACAACGCATCCATAATCCCTTGTAACACCTGCGCTTGCGGAGGCTGCAACAACAACCCGACCTGCAG CTCGAATTCGAAAGCCCTCTTATTACCATCGCGGGCCCTAGCCATCCCGTTTGAGAACAGGACGACCGATTCCCTAGCTTGGGCAACCCTCAACAAGAGA TCCGTACCCGATCCTTTACCCTGCGGGGACAATTGTGGTGTAACGATCCACTGGCACTTACTGTCAGATTTCAAAGACGGATGGACGGTCAGGATGACTC TATTCAACTGGGGTCAAACGGCTTTCCAGGATTGGTTTGCTGCGGTCCAGCTGGACGAAAAGGCAGTGGGTGGATTTGAGAATGTGTATTCTTTTAACGG CACCGTATTGGAGAATTCCACTGATACTGTATTCTTCCAAGGTTTGCCTGGCTTGAATTTCCTGCTGTCTCTGAGTCCTCCCGGTAATCCCAAGAAGGAT TATCCTGTTCCGGGAATGCAACAATCGATCATGTCGTTTACGAAGAAGAAAACGACCGGGCTTGATTTGGTTTCGGGAGATGGATTCCCGACGAAAGTGA TGTTCAATGGTGAAGAATGTGTAGTTCCTGCGTTTCTGCCAAGTAATGGGTGTGGAAGATTAGAAGGAATAACTAGTTTCAGCTTTGTTCTTTGCCTTTT GGTGGGAATAGCTCTCTTTTACTGA
AA sequence Show only first row Show all	>Lus10025045 pacid=23148422 polypeptide=Lus10025045 locus=Lus10025045.g ID=Lus10025045.BGIv1.0 annot-version=v1.0 MAKSHGGGATNSSVFSIPLLITLFFLFLVSTSLAQPTPSPPLPPPPITQKTSCSGVFVAYATDGGGFAIPPNDPSNQAYRFSSTLTVANNGRTELKAWRV FVGFQFDELLVSADKVVLADATPLPAAVGNGTVFAGSSHPDLKTAIQTAGDATQMEVQVQLVGTRFGPPPNATNFLPLPANVSLSNDGYFCPDSRVEGNM RWTCCERRNTPTNSPPNQAPQSNFPPAQPADLSITYDVLNTYDTDYWAQVTISNSHPLARLDNWQLSWDWTRDEFIFAMKGAYPLSLDTSECIFGSQGQH YLKMDFSQALNCQRRPTVVDLPRERANDTEIGRIPFCCRNGTILPPVMDSSKATSIFLMHVFKMPPDLNRTEFVVPQGWRIGTGGSLSSDFQCGSPVQVS PTQFPDPSGLPSTRTAVATWRIACNVVTKPKEENPKCCVSFSAFYNASIIPCNTCACGGCNNNPTCSSNSKALLLPSRALAIPFENRTTDSLAWATLNKR SVPDPLPCGDNCGVTIHWHLLSDFKDGWTVRMTLFNWGQTAFQDWFAAVQLDEKAVGGFENVYSFNGTVLENSTDTVFFQGLPGLNFLLSLSPPGNPKKD YPVPGMQQSIMSFTKKKTTGLDLVSGDGFPTKVMFNGEECVVPAFLPSNGCGRLEGITSFSFVLCLLVGIALFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	3.6	0.9778
					Lus10041161 [exp]	5.3	0.9680
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	6.3	0.9601
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	7.1	0.9666
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	7.7	0.9580
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	8.8	0.9651
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	9.8	0.9696
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10003058 [exp]	9.9	0.9453
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	10.0	0.9729
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10003063 [exp]	15.9	0.9424

Compare expression of checked genes

Lus10025045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.