Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02730 1451 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT3G03050 1240 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1203 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1180 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT2G33100 1051 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 962 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G64740 653 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT5G05170 652 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G21770 645 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G17420 642 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010024 [exp] 1848 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10038008 [exp] 1234 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 1230 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1178 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1170 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1125 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10002134 [exp] 1090 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10030453 [exp] 1057 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 991 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G125100 [exp] 1515 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1511 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.019G049700 [exp] 1236 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1228 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1175 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.004G208800 [exp] 1152 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.009G170000 [exp] 1150 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.003G097100 [exp] 1144 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G177800 [exp] 1035 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1028 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10025046 pacid=23148426 polypeptide=Lus10025046 locus=Lus10025046.g ID=Lus10025046.BGIv1.0 annot-version=v1.0 ATGGTTCTGAAAACTTCTTCGTCGTCTCCGACGGCCTCTTCTCCTGTAACAATCACCGTCTCCTCCGGCGGAGAAAGGAGACGAAGCATGGGTTTAACTA GTCCAGTTCCACGGCCTTCCTTCTCCAACAACCCTAATACTTCTCCTTCTGGTCTCAAGAACCGTAGATCGTCGCTCGGCGGCGGCTGCTCAATCTCCGG CGATGCGGCCGACGAGGTGGCTTCTGAGTACGTGACTTACACCGTCCACATCCCTCCAACTCCCGACCACCAGCCGATGGCTCCAGAGGAAACAAAGCTG GACCGGAGCTTCATCTCCGGCACAATCTTCACCGGCGGGTTCAATTCCGTCACCAGGGGACACGTCGTCGAGAATCCGAATACTCCGGCGGGGGATGCGG CGGCGAAGAAACTGATGATCGATTGCGGGATGAGAGGGTGCGACGAGACGGCAATAAAGAAGATGAAATGCGAGTGCGGGTTCAAGATCTGTAAAGATTG CTACTTGGACTGTGTGGGAAACAACGGAAGCGGAAATTGCCCCGGGTGTAAAGAACCCTATAGGGATTTGGACGGCGAAGAGATGAATCGGTACGGAAGG GAATTAGACGAAGATGATGACGTGGAGGCAGAGGATCAAGCTCTGCCACTGCCGAAGCTGGACAGGAGGCTGTCTTTAGTGAAGTCGTTCAAGAGGATGA GTCATCCTCCTGAGTTCGACCATACCAGGTGGCTGTTTGAGACCAAAGGGACTTATGGCTATGGAAATGCTGTTTGGCCTAAAGACGGCTATGGTGCTAA TGGGTTTGATCAGCAGCATCCACCAAACTTTGGTGAGAAGAGTGGAAGGCCCTTGACTAGGAAAGTTTCTGTTTCTGCTGCAATTATCAGCCCTTACAGG CTGCTGATTGTGATACGGCTAGTAGCACTAGGCTTGTTTCTGACATGGAGAGTAAGGCACCCAAACAGGCAAGCAATGTGGCTATGGGGAATGTCAGTAA CTTGCGAGCTATGGTTTGCACTCTCATGGATTCTGGATCAGCTCTACAAGCTCTGCCCTGTCAATAGAGTGACTGATCTCTCAGTCCTCAAGGAAAGATT CGAGTCACCAAATCTCAGAAACCCAAAAGGAAGATCAGACCTCCCTGGAATCGATGTCTTCGTCTCAACAGCTGATCCAGAAAAGGAACCTCCGTTAGTC ACATCAAACACAATCCTTTCGATCCTGGCAGTCGATTACCCGGTCGAAAAGCTGGCTTGTTATCTCTCTGATGATGGTGGGGCTCTCCTGACGTTTGAAG CTTTAGCTGAGACGGCTAGCTTTGCAAAGACTTGGGTTCCTTTCTGCAGGAAGCACAAGATCGAGCCGAGGAACCCTGAGGCCTATTTCGGGCAGAAGCG CGATTTCTTGAAGAATAAAGTGAGGGTAGATTTTGTGAGGGAGAAGAGGAGGGTGAAGAGGGAGTATGATGAGTTTAAAGTGAGGATCAACTCGTTGCCT GAGTCTATTAGGAGGAGGTCTGATGCTTATAATGCTCATGATGAGCTTAGAGCCAAGAAGAAGCAGATGATGGAAATGGGTGGAGGGAGTACTTCGGATT CTCTTAAGGTGAATAAGGCTACTTGGATGTCTGATGGCTCTCATTGGCCTGGGACTTGGGCTTCTGGTGAAGCAGATCATTCCAGAGGAGACCATGCTGG TATTATTCAGGCAATGCTAGCTCCACCGAATGCAGAAGCAGTCTTTGGAACAGAAGCAGATGCAAAGAACTTGGTAGACACAACAGAAGTCGACATCAGA TTACCAATGCTGGTCTACGTCTCACGTGAAAAAAGACCAGGCTACGATCACAACAAGAAAGCCGGAGCCATGAATGCTCTTGTGAGAACCAGTGCAATCA TGTCCAACGGTCCCTTCATTCTGAACCTCGACTGCGATCACTACATCTACAACTCCTTAGCTCTCAGAGAAGGAATGTGCTTCATGCTGGACCGAGGCGG AGACAAAATCTGCTACGTTCAGTTCCCTCAGAGGTTCGAAGGCATCGATCCTAGCGACCGGTACGCAAATCACAACACTGTCTTCTTTGATGTCAGCATG AGAGCTCTCGATGGGTTGCAAGGTCCTATGTACGTTGGAACCGGCTGCATTTTTCGAAGAACGGCTCTTTACGGTTTTAGCCCTCCTAGGGCTACTGAAC ATCATGGATGGCTGGGAAGAAGGAAGATCAAATTGCTTCTTAGGAGGCAGAAAAAGAAGCAGGAAGACGAAATTCGGTTGAATTTTGATAATGATGATTG TGATGGTGATGGTGATATTGATATTGAGTCGTTGCTTGTACCAAAGAGATTTGGATCTTCAACTTCATTAGCTTCATCGATTCCGATTGCGGAATTCCAA GGAAGGTTACTTGCTGTGCAAGGAAACAAGAATCATGGGAGGCCAGCCGGATCACTTGCTGTACCGAGAGAGCCACTGGATGCTGCAACAGTTGCAGAGG CAATCAATGTGATCTCCTGCTTCTACGAGGATCGAACCGAGTGGGGTAAACGAGTCGGTTGGATTTACGGTTCAGTTACTGAAGATGTTGTGACTGGTTA CAGGATGCATAATAGAGGGTGGAGATCTGTGTATTGTGTAACCAAAAGAGATGCCTTCAGAGGAACGGCACCTATTAACTTGACAGACAGGCTTCACCAG GTACTAAGATGGGCTACTGGCTCGGTGGAGATATTTTTTTCGAGGAATAACGCTATTTTCGCCACTCGTAGAATGAAATTCCTGCAACGAGTCGCATATT TCAACGCTGGGATGTATCCTTTCACGTCCTTCTTTCTCATCGTCTACTGCATCTTGCCAGCAATGTCTCTTTTTTCGGGGCAGTTCATCGTTGCATCACT CAATGTCACATTTCTAGTCTATCTTTTGGTGATCAGCGTGACACTTACTATGCTGGCATTGCTCGAGATCAAGTGGTCAGGGATCACGTTACACGATTGG TGGCGAAACGAACAGTTCTGGGGAGGTGTGTTCTTCAGCTTTTGGGTTTTGTCTCATTTGTACCCTTTTGCTAAAGGGTTGATGGGGAGAAGGGGCAAAG TTCCAACCATTGTTTATGTTTGGTCGGGTCTTTTGTCTATCATTGTGTCTTTGCTTTGGACTTATATCAGTCCTCCTCCTGGTTTGAAGCAGCAGGATTT CGGGTCGTTTCAGTTCCCTTGA
AA sequence Show only first row Show all	>Lus10025046 pacid=23148426 polypeptide=Lus10025046 locus=Lus10025046.g ID=Lus10025046.BGIv1.0 annot-version=v1.0 MVLKTSSSSPTASSPVTITVSSGGERRRSMGLTSPVPRPSFSNNPNTSPSGLKNRRSSLGGGCSISGDAADEVASEYVTYTVHIPPTPDHQPMAPEETKL DRSFISGTIFTGGFNSVTRGHVVENPNTPAGDAAAKKLMIDCGMRGCDETAIKKMKCECGFKICKDCYLDCVGNNGSGNCPGCKEPYRDLDGEEMNRYGR ELDEDDDVEAEDQALPLPKLDRRLSLVKSFKRMSHPPEFDHTRWLFETKGTYGYGNAVWPKDGYGANGFDQQHPPNFGEKSGRPLTRKVSVSAAIISPYR LLIVIRLVALGLFLTWRVRHPNRQAMWLWGMSVTCELWFALSWILDQLYKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLV TSNTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFAKTWVPFCRKHKIEPRNPEAYFGQKRDFLKNKVRVDFVREKRRVKREYDEFKVRINSLP ESIRRRSDAYNAHDELRAKKKQMMEMGGGSTSDSLKVNKATWMSDGSHWPGTWASGEADHSRGDHAGIIQAMLAPPNAEAVFGTEADAKNLVDTTEVDIR LPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDKICYVQFPQRFEGIDPSDRYANHNTVFFDVSM RALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWLGRRKIKLLLRRQKKKQEDEIRLNFDNDDCDGDGDIDIESLLVPKRFGSSTSLASSIPIAEFQ GRLLAVQGNKNHGRPAGSLAVPREPLDAATVAEAINVISCFYEDRTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQ VLRWATGSVEIFFSRNNAIFATRRMKFLQRVAYFNAGMYPFTSFFLIVYCILPAMSLFSGQFIVASLNVTFLVYLLVISVTLTMLALLEIKWSGITLHDW WRNEQFWGGVFFSFWVLSHLYPFAKGLMGRRGKVPTIVYVWSGLLSIIVSLLWTYISPPPGLKQQDFGSFQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	0	1
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	1.0	0.9872
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	3.2	0.9722
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	3.5	0.9697
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	4.2	0.9601
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	4.9	0.9694
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	6.8	0.9455
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	10.2	0.9353
AT4G14180		ATPRD1	putative recombination initiat...		Lus10002081 [exp]	11.0	0.9328
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	11.0	0.9632
AT5G23910			ATP binding microtubule motor ...		Lus10039243 [exp]	11.0	0.9590

Compare expression of checked genes

Lus10025046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.