Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13230 187 / 2e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 171 / 6e-47 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11460 169 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 171 / 2e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G38010 167 / 2e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G04370 169 / 4e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 167 / 2e-45 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G34400 165 / 3e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G03380 165 / 6e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G47840 164 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034497 [exp] 475 / 2e-163 AT3G01580 330 / 2e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 197 / 7e-56 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038187 [exp] 174 / 1e-48 AT3G25060 630 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 175 / 5e-48 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030124 [exp] 170 / 8e-48 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 174 / 9e-48 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 174 / 1e-47 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 172 / 4e-47 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025915 [exp] 168 / 1e-46 AT3G25060 627 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205900 [exp] 181 / 3e-50 AT2G17210 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 181 / 3e-50 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 179 / 2e-49 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 177 / 9e-49 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 177 / 1e-48 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 174 / 9e-48 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 174 / 1e-47 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 171 / 3e-47 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G087100 [exp] 169 / 1e-46 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G161800 [exp] 169 / 3e-46 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025047 pacid=23167829 polypeptide=Lus10025047 locus=Lus10025047.g ID=Lus10025047.BGIv1.0 annot-version=v1.0 ATGAACATGTTCTCCCGGATGCGTCACTCCGGTTTGGTTCCTAATTCTTTCTTTATGGTGGGCGTTCTTGTCTGTGCTGCTGGTTTTGGTGACTTGAAGC TTGGCAGGTATGTCCATGGGGTTGTTGTGAAAAGTGGGTTGCAGTCTGATTTGTTCGTTGCGACGGCCGCGATTAACATGTATGCGAAATGTGGGGATGT GTTGGATTGTTATAAAGTGTTTGGGGAAATGAAGAGTTTGGATTTGGTTCCGTGCAATACTGTTATGGCAGGATTTGTTGCCAATGGGCTATACACCGAA AGCTTTGAGCTTTTTGAAAAGTTCAGGAAGGGTGGTTTTGTGCCAAGTTCGTCTACTATGTTGACTCTTATGAGGGGTTGTGTTGGTTTAGGGTTTAGGA TGCTTGCTGATTCTTTTAATGGTCTAGTCATTAAGCTCGGGATTGAATTGGATTCTCCTGTGAAAAATGCAGTCATTGGCACGTACTCAAGTTTCTTGGA CATAACTGCAGCTGGGAAAGCTTTTCAGGAAATGGAATGTAAAGATATTATCAGTTGGTCCACAATGATGGGTTTATTGGTTGACCTTGAAGATGCTTCT GGAGCTCTAAGACTCTACATTGATATGAGGAGCAATGGGGTCAATGTTGATGCATTAGTAATAGTGCATCTTATCTTGGCTTCTGGTGTTTTAGGTCAAG TGAATTTGGGAAAGGAAATCCATGCTCTGGCTATCGTCATGGGTGACATGTGTTCTCTTCGTAATGTAGCGTCATGGAATGCCATCATATCCGGATATGG TATTAATGGCTGTGGAGAATTCGCTGTTCGGATTTACCGTGATATGATGAAGGGAAACGCAGACCCTGACAGCAGAACTTACTTGGCTGTTCTGAATGCT TGCAGTCATTCAGGATTGGTAGCTGATGGTGTGAACATATTCAATAAAATGGTGGAGGATAAAAAAGTGAACCCAAAGCAAGAGCATTTCGGGTCTGCAA AGCTCCCCGAAGGAGTAGCGGAGCAAGCTGCAAAGAATGTATCGATGGAGCAGGAATTGGGTGAAAATGTTTTGCCCCTGTCGAATGCGTATGCATCAGT AGGGAGGTTTGAAGATGCTGAAGCATTGAGGTTGAGCATTCAGGACAAAAGATTCATGAAGGAACCTGGTTTCAGCCTTGTGAAAGGTACACATTATGAC TGTGGTTGA
AA sequence Show only first row Show all	>Lus10025047 pacid=23167829 polypeptide=Lus10025047 locus=Lus10025047.g ID=Lus10025047.BGIv1.0 annot-version=v1.0 MNMFSRMRHSGLVPNSFFMVGVLVCAAGFGDLKLGRYVHGVVVKSGLQSDLFVATAAINMYAKCGDVLDCYKVFGEMKSLDLVPCNTVMAGFVANGLYTE SFELFEKFRKGGFVPSSSTMLTLMRGCVGLGFRMLADSFNGLVIKLGIELDSPVKNAVIGTYSSFLDITAAGKAFQEMECKDIISWSTMMGLLVDLEDAS GALRLYIDMRSNGVNVDALVIVHLILASGVLGQVNLGKEIHALAIVMGDMCSLRNVASWNAIISGYGINGCGEFAVRIYRDMMKGNADPDSRTYLAVLNA CSHSGLVADGVNIFNKMVEDKKVNPKQEHFGSAKLPEGVAEQAAKNVSMEQELGENVLPLSNAYASVGRFEDAEALRLSIQDKRFMKEPGFSLVKGTHYD CG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10025047 [exp]	0	1
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	25.8	0.5070
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029314 [exp]	46.1	0.4787
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	97.2	0.4541
					Lus10031576 [exp]	105.0	0.4310
AT5G62280			Protein of unknown function (D...		Lus10006163 [exp]	149.5	0.4111
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10025375 [exp]	150.3	0.4222
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10007684 [exp]	263.5	0.3668

Compare expression of checked genes

Lus10025047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.