Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34980 311 / 2e-101 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 220 / 2e-66 Subtilase family protein (.1) AT5G67360 193 / 9e-57 ARA12 Subtilase family protein (.1) AT3G14067 184 / 2e-53 Subtilase family protein (.1) AT5G51750 178 / 4e-51 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 175 / 4e-50 Subtilase family protein (.1) AT1G01900 154 / 2e-42 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 149 / 9e-41 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67090 142 / 3e-38 Subtilisin-like serine endopeptidase family protein (.1) AT2G04160 139 / 4e-37 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034495 [exp] 425 / 8e-153 AT4G34980 333 / 2e-110 subtilisin-like serine protease 2 (.1) Lus10037449 [exp] 199 / 1e-58 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 196 / 2e-57 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 187 / 2e-54 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 175 / 4e-50 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 175 / 5e-50 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 174 / 8e-50 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10027891 [exp] 174 / 2e-49 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10013154 [exp] 173 / 2e-49 AT3G14067 915 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173900 [exp] 323 / 2e-105 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 317 / 3e-103 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.003G071800 [exp] 229 / 3e-70 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 228 / 2e-69 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 201 / 7e-60 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 194 / 5e-57 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 190 / 2e-55 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 181 / 4e-52 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 179 / 1e-51 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.003G067000 [exp] 177 / 6e-51 AT3G14067 969 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Lus10025048 pacid=23167791 polypeptide=Lus10025048 locus=Lus10025048.g ID=Lus10025048.BGIv1.0 annot-version=v1.0 ATGGCGTCGCTTCTCGTTATCCTCCTCCTCATTTCCTTCGCCGCCGGCCATTCAACGGCGTTGAACCCCAAGACCTTCATTTTCCGCGTCGATTCCAACT CCAAACCCTCCGTTTTCCCAACTCACTACCATTGGTACTCCTCTGAGTTCGCCGACCCGCCCCAGATCCTTCACGTCTACGACACCGTCTTCCACGGCTT CTCGGCCGTCTTAGCGCCTGATTACGCTGTCTCGCTCGCGAAGCACCCTTCTATCCTTGCTGTATTCGAGGATCACCGGAGGGAGCTTCACACCACCAGA TCCCCTCAATTTCTTGGGCTCAGAAACCAGCAAGGCCTCTGGTCGCAGTCCGACTACGGATCCGACGTCATTATCGGAGTGTTCGACACCGGGGTCTGGC CTGAGCGGAGGTCTTTTTCGGACACGAATCTTGGCCCGGTCCCTTCCCGATGGAAAGGGTACTGCGAGGCTGGAGTTAAGTTCACGGCGAAGAACTGTAA CAAGAAGTTAATCGGAGCTAGGTTCTTTGTCAAAGGGCATGAAGCCGCAGGGTCAGTGGGGCCCATTGGCGGAATTAACGAGACGGTTGAGTTTAGGTCC CCGAGGGACGCCGACGGCCACGGTACCCGTCGTGCACCTCCACACCCCCCGCTTACACGGCCGCCGGGAGGCACTCGTTTAAGGCGAGCATGGAAGGGTA CGCGCTCGGGATTGCGAAAGGAGTCGCGCCCAAGGCAAGGCTGGCGGTTTACAAGGTCTGCTGGAAGGACGCCGGATGTTTAG
AA sequence Show only first row Show all	>Lus10025048 pacid=23167791 polypeptide=Lus10025048 locus=Lus10025048.g ID=Lus10025048.BGIv1.0 annot-version=v1.0 MASLLVILLLISFAAGHSTALNPKTFIFRVDSNSKPSVFPTHYHWYSSEFADPPQILHVYDTVFHGFSAVLAPDYAVSLAKHPSILAVFEDHRRELHTTR SPQFLGLRNQQGLWSQSDYGSDVIIGVFDTGVWPERRSFSDTNLGPVPSRWKGYCEAGVKFTAKNCNKKLIGARFFVKGHEAAGSVGPIGGINETVEFRS PRDADGHGTRRAPPHPPLTRPPGGTRLRRAWKGTRSGLRKESRPRQGWRFTRSAGRTPDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	0	1
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034495 [exp]	1.4	0.9317
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	3.2	0.9260
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	6.7	0.9245
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	7.3	0.9160
					Lus10026434 [exp]	7.7	0.9094
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	8.0	0.9202
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	8.1	0.9084
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	9.2	0.9082
					Lus10002716 [exp]	9.8	0.8987
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	10.2	0.9165

Compare expression of checked genes

Lus10025048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.