Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16700 232 / 7e-80 ADF5, ATADF5 actin depolymerizing factor 5 (.1.2) AT4G34970 229 / 9e-79 ADF9 actin depolymerizing factor 9 (.1) AT2G31200 184 / 6e-61 ADF6, ATADF6 actin depolymerizing factor 6 (.1) AT4G00680 184 / 6e-61 ADF8 actin depolymerizing factor 8 (.1) AT1G01750 182 / 4e-60 ADF11 actin depolymerizing factor 11 (.1) AT4G25590 178 / 2e-58 ADF7 actin depolymerizing factor 7 (.1) AT5G59890 177 / 3e-58 ADF4, ATADF4 actin depolymerizing factor 4 (.1.2) AT3G46010 176 / 1e-57 ATADF1, ADF1 actin depolymerizing factor 1 (.1.2) AT5G59880 172 / 2e-56 ADF3 actin depolymerizing factor 3 (.1.2) AT3G46000 171 / 5e-56 ADF2 actin depolymerizing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034494 [exp] 242 / 3e-84 AT4G34970 202 / 2e-68 actin depolymerizing factor 9 (.1) Lus10024418 [exp] 189 / 7e-63 AT5G59890 249 / 6e-87 actin depolymerizing factor 4 (.1.2) Lus10022933 [exp] 189 / 1e-62 AT2G31200 254 / 9e-89 actin depolymerizing factor 6 (.1) Lus10024417 [exp] 185 / 3e-61 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10025319 [exp] 185 / 3e-61 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10024885 [exp] 183 / 1e-60 AT2G31200 230 / 3e-79 actin depolymerizing factor 6 (.1) Lus10008489 [exp] 167 / 4e-54 AT1G01750 192 / 2e-64 actin depolymerizing factor 11 (.1) Lus10027474 [exp] 165 / 2e-53 AT5G52360 244 / 6e-85 actin depolymerizing factor 10 (.1) Lus10023428 [exp] 171 / 4e-53 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133100 [exp] 257 / 1e-89 AT2G16700 257 / 7e-90 actin depolymerizing factor 5 (.1.2) Potri.004G173800 [exp] 255 / 7e-89 AT2G16700 255 / 4e-89 actin depolymerizing factor 5 (.1.2) Potri.005G223800 [exp] 193 / 3e-64 AT2G31200 225 / 5e-77 actin depolymerizing factor 6 (.1) Potri.001G236700 [exp] 181 / 7e-60 AT5G59890 256 / 2e-89 actin depolymerizing factor 4 (.1.2) Potri.002G038800 [exp] 181 / 8e-60 AT2G31200 241 / 2e-83 actin depolymerizing factor 6 (.1) Potri.009G028100 [exp] 179 / 7e-59 AT5G59890 256 / 1e-89 actin depolymerizing factor 4 (.1.2) Potri.008G052100 [exp] 179 / 8e-59 AT5G59890 249 / 1e-86 actin depolymerizing factor 4 (.1.2) Potri.009G028200 [exp] 178 / 9e-59 AT5G59890 258 / 4e-90 actin depolymerizing factor 4 (.1.2) Potri.001G236400 [exp] 177 / 2e-58 AT5G59890 246 / 1e-85 actin depolymerizing factor 4 (.1.2) Potri.015G144500 [exp] 177 / 2e-58 AT4G25590 257 / 6e-90 actin depolymerizing factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00241 [flax] [poplar] Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Representative CDS sequence Show only first row Show all	>Lus10025049 pacid=23167734 polypeptide=Lus10025049 locus=Lus10025049.g ID=Lus10025049.BGIv1.0 annot-version=v1.0 ATGGCGATGGCTTTCAAAATGGCGGCGAGCGGGATGTGGGTGAGCGACGAGTGCAGGAACTCGTTCATGGCGATGAAGTGGAAGAAGTCCCACCGCTACA TAGTCTTCAAGATCGACGAGAAGACCGGCCTAGTCGCCGTCGACAAGGTTGGCGGCCCGGGGGAGAGCTACGACGACCTCGCCGCCTCCTTGCCCGACGA CGACTGCCGCTACGCCGTCTTTGATTTCGACTTCGTCACCGTCGACAACTGCCACAAGAGCAAGATCTTCTTCATTGCCTGGGCACCGGCTGCGTCGAGG ATCAGAGCAAAGATGATGTACGCGACATCGAAGATCGGAGTGAAGGGAGCATTGGATGGGATCCATTACGAGCTTCAAGCGACCGACCCGACTGAAATGG GGTTCGACGTGATCAAGAATCAAGCCAAGTGA
AA sequence Show only first row Show all	>Lus10025049 pacid=23167734 polypeptide=Lus10025049 locus=Lus10025049.g ID=Lus10025049.BGIv1.0 annot-version=v1.0 MAMAFKMAASGMWVSDECRNSFMAMKWKKSHRYIVFKIDEKTGLVAVDKVGGPGESYDDLAASLPDDDCRYAVFDFDFVTVDNCHKSKIFFIAWAPAASR IRAKMMYATSKIGVKGALDGIHYELQATDPTEMGFDVIKNQAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	0	1
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	1.7	0.8124
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10043190 [exp]	2.6	0.7573
					Lus10007992 [exp]	3.6	0.8203
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	4.9	0.8128
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	5.7	0.8050
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	6.3	0.7950
AT1G73320			S-adenosyl-L-methionine-depend...		Lus10031894 [exp]	8.7	0.7216
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	12.5	0.7751
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	17.9	0.7062
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	17.9	0.7552

Compare expression of checked genes

Lus10025049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.