Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38630 463 / 5e-162 ATMCB1, MBP1, AT-MCB1 ,RPN10 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034493 [exp] 642 / 0 AT4G38630 512 / 0.0 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133000 [exp] 520 / 0 AT4G38630 436 / 3e-152 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1) Potri.004G173700 [exp] 496 / 8e-175 AT4G38630 397 / 5e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1) Potri.007G056200 [exp] 462 / 2e-161 AT4G38630 397 / 6e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02809 [flax] [poplar] UIM Ubiquitin interaction motif CL0128 [flax] [poplar] vWA-like PF04056 [flax] [poplar] Ssl1 Ssl1-like
Representative CDS sequence Show only first row Show all	>Lus10025050 pacid=23167823 polypeptide=Lus10025050 locus=Lus10025050.g ID=Lus10025050.BGIv1.0 annot-version=v1.0 ATGGTTCTCGAGGCGACTATGATCTGCATTGACAATTCGGAATGGATGAGGAACGGGGATTACAGTCCTTCTCGTTTCCAAGCTCAAGCGGATGCCGTCA GTCTAATCTGCGGGGCGAAGACTCAGTCTAATCCGGAGAATACAGTAGGGATTCTGACGATGGCTGGTAAAGGAGTGCGTGTGTTGACTACACCCACTAC TGATCTCGGAAAACTCCTGGCTTGTATGCATGGTCTTGATATAGGGGGTGAAATGAACATAACGTCTGCGGTTCAGATTGCCCAACTGGCTCTTAAGCAT CGTCAGAACAAGAATCAGCGACAAAGAATCATAGTTTTTGCTGGAAGTCCGATCAAATACGATAAGAAGGTGCTTGAGTCCATAGGAAAGAAATTGAAGA AGAGTAGTGTCTCTCTCGATATTGTGGATTTTGGTGAGGAAGATGATGGAAAGCCAGAGAAATTGGAGGCCCTCCTCGCAGCTGTCAATAACAATGACAG CAGTCATATAGTTCACATTCCTCCTGGGCCGAATGCGCTCTCTGATGTACTTATCAGCACTCCTGTGTTTACGGGAGATGGAGAAGGGGGAGCTGGATTT GTACCAGCTGGGCCAGCAGCTGGTGGTGACTACGATTTTGGTGTAGATCCCAACATCGATCCTGAGCTGGCCCTTGCCCTTAGAGTTTCTATGGAAGAGG AGAGGGCAAGGCAAGAAGCTGCGGCTAAAAAGGCTGCTGAGGAAGCTTCAACACAGGAAAAAGGAGATGGAGAATCGTCCATGTCACAGGATACAACAAT GGCCAACAGTGCTACAGCTACAGCTGGAGCCGCTGATTCTACTGAGCCAATGAGTGAGGTGGATGCATTGCTGCAGCAAGCCATTGCCTTGTCTATGCAA ACTCCTGGATCTGACTCGTCTGTGCGAGACACTGATATGTCAGATGCAACCAATGCAGACCAGGACTTGGCTGCTGCCCTTCAGATGTCCATGCAGGAGG GTGAAAAGGATTCGTCAAACCGAATGGATGAGAGTGAGGTACTAGAAGACCAAGCCTTCGTGTCGTCTGTCCTGGCCTCACTTCCTGGTGTTGACCCCAA CGACCCTTCTGTTAAAGAACTGCTTGCATCTTTGCATGGAAAATCCGAGGTTGGTACCAGAACTTCTTCCCCTGACCAAATTCATAACTCTATTAAACGT TCCTCTCAAATGATTCTGACATATGGTTCCTGTTTTTCCCCCATCACAATGACTAGTCTGATCAGAAGAAGGATGAAGACAAGTCAGCAAAAGACGACGA GAAGTGAACAAAAGACGTGCTCGATTCTACGCGGCCTGCTGCTGCTGCTGCTTGTTCTATCTACAAAGCAAAGGCCTTCTACATCTGTGTCTTGCCTGCT GCTGGCTGGATTGTATTTTGTTTACTGGTAG
AA sequence Show only first row Show all	>Lus10025050 pacid=23167823 polypeptide=Lus10025050 locus=Lus10025050.g ID=Lus10025050.BGIv1.0 annot-version=v1.0 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVSLICGAKTQSNPENTVGILTMAGKGVRVLTTPTTDLGKLLACMHGLDIGGEMNITSAVQIAQLALKH RQNKNQRQRIIVFAGSPIKYDKKVLESIGKKLKKSSVSLDIVDFGEEDDGKPEKLEALLAAVNNNDSSHIVHIPPGPNALSDVLISTPVFTGDGEGGAGF VPAGPAAGGDYDFGVDPNIDPELALALRVSMEEERARQEAAAKKAAEEASTQEKGDGESSMSQDTTMANSATATAGAADSTEPMSEVDALLQQAIALSMQ TPGSDSSVRDTDMSDATNADQDLAAALQMSMQEGEKDSSNRMDESEVLEDQAFVSSVLASLPGVDPNDPSVKELLASLHGKSEVGTRTSSPDQIHNSIKR SSQMILTYGSCFSPITMTSLIRRRMKTSQQKTTRSEQKTCSILRGLLLLLLVLSTKQRPSTSVSCLLLAGLYFVYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	0	1
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	1.7	0.7810
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	3.0	0.8091
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	5.3	0.7622
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	6.3	0.7610
AT5G47400			unknown protein		Lus10004740 [exp]	9.6	0.7819
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	12.6	0.7801
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	19.3	0.7650
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	22.4	0.7717
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	23.2	0.7311
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	25.5	0.6922

Compare expression of checked genes

Lus10025050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.