Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38640 595 / 0 Plasma-membrane choline transporter family protein (.1) AT3G15380 55 / 9e-08 Plasma-membrane choline transporter family protein (.1) AT1G25500 44 / 0.0004 Plasma-membrane choline transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034492 [exp] 915 / 0 AT4G38640 645 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10035837 [exp] 58 / 1e-08 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10036620 [exp] 57 / 3e-08 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034295 [exp] 46 / 6e-05 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10041476 [exp] 46 / 9e-05 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132900 [exp] 667 / 0 AT4G38640 631 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.004G173600 [exp] 643 / 0 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.011G121100 [exp] 52 / 7e-07 AT3G15380 1135 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.010G128100 [exp] 47 / 3e-05 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.008G118200 [exp] 44 / 0.0002 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10025051 pacid=23167786 polypeptide=Lus10025051 locus=Lus10025051.g ID=Lus10025051.BGIv1.0 annot-version=v1.0 ATGGGAAGTAACACCGACGAACCAGACAACAAGAGAGTCGCATCCTCTTCATTCTCCTCTTCCCCAACTCACCCGCTCCTCTTTAAGCCGCCGATCGACG AACCCACCACTTCCGACCCGTTTTCACCCGAATCCGACCCGACCCAGTTCCTCCAGATCTCGTACAATTCCGGACCGAGGCAGTTCAAGGACATCACTTT CCTGATCCTTTTCCTCCTCTTCCTCCTCTCAACTTTCGGCGTCGGAATCTTCTCGATCGCCCATAAAAATCCCAATTACGGCAACCTCTCCTCCTTCACC TTCGATTCCCAATCCTCCTCCTGCGTACCCACCTCACCAAACTCTTCTTCTTCATCCCCTGCAGTCAATTTCTACTACTTCCTCGTCAACTTGGGCGAAT CCCGCGGGTTCGTCGACGGTCTGATATGGGCAATCGTAGCAACAGTGATCCTGAGCGGACCTATCAGTTTTCTCCTCCTTTTCTCTCTCAGGCATTACAC AAAATACCTTGTCTACGCTTCTCTCCCGTTCTTCATCATCGTCCCAATCTTCTTCAACGTCTACTGGTTCGTCGCCTGCACTGTCAGCTCTTCCTGCAGC GATGCTCTGCCTCTGGGTTACAGGATTTTTGTCATGGCTCTAATTTTTGTGGTGATCGGTATGCTCGTGTGGATTCTGGTGGCGAATTGGTACAGAGTCG AGCTGACTATAGACATAATTGGGGTTGCTTCTGATGCACTGTACAAGAATTTGGGGCTGTTCGTTGCATTGCCGTTGTTGACATTTGGATTGGCGGTTTA CTATGTCCCCATTGTGGTGTTCTTAGTGTTTGCGAGGTTTAATGGGAAGATAGTGCCTAAGGAGTTGCATGGAGAGTTTCATTGTGGCTGGAAGGAAGAT AGTTGGGTCCCTGCTTACTATACTTTGGCCATTGTTACTTTGTTGTGGTCGTCTGCGGCCATGGTGGAGGCTCAGGTTTATGTGATCAGTGGGACAATTG GTCAGTGGTACTTTTCTAAGGGGGATTCGCCGCCTAAACGTGGCATAAGAACTTCTCTCAGGAATGCCTTCGGCCCCTCCTCCGGCACCATATGTCTCTC AGGCTTACTTATCTTTATTGTACGCATGGTACGAGTAGCTGTCGACAGTGCAAAACGAGAAGACAGCACCGGCATTGTGAATCTTATACTGCGGACTTGT GTCAACGCCCTCCTCTCTGCAATTGAATTTCTCAACAAGTTCACCATCAACTTTGTCGCGATTACTGGCGAATCCTACTGCACTTCCGCACGCATGGCCT ACGAAGTCCTAAAGCGCAACCTCCTCTCCGCCGTCTTCGTGGAGGTTATCTCCACTCGCATATTAGGTGGTATCACGTTCGTTCTCTCAGCTGTATACGC GATCGCGGTCTGTGCTATACTTAAGGGTGCCACGAATCTCGGGACTGACTCGTACTATGTGGCGATCCTGGCATGGGCGTTGTTGATCGTGGTGTTGGGG TTCCTTGTACATGTGCTGGACAATGTGATTGACACCATTTACATGTGTTACGCGATAGATAGAGATAGAGGTGAAGTGTATAAGTCAGATGTTCATGAGG TGTATGTGCATTTGCCCATCAGTAGGAACAATAGGCCAAGTTTGAGTCCTAGAACTTCTGCAGTTGTATGA
AA sequence Show only first row Show all	>Lus10025051 pacid=23167786 polypeptide=Lus10025051 locus=Lus10025051.g ID=Lus10025051.BGIv1.0 annot-version=v1.0 MGSNTDEPDNKRVASSSFSSSPTHPLLFKPPIDEPTTSDPFSPESDPTQFLQISYNSGPRQFKDITFLILFLLFLLSTFGVGIFSIAHKNPNYGNLSSFT FDSQSSSCVPTSPNSSSSSPAVNFYYFLVNLGESRGFVDGLIWAIVATVILSGPISFLLLFSLRHYTKYLVYASLPFFIIVPIFFNVYWFVACTVSSSCS DALPLGYRIFVMALIFVVIGMLVWILVANWYRVELTIDIIGVASDALYKNLGLFVALPLLTFGLAVYYVPIVVFLVFARFNGKIVPKELHGEFHCGWKED SWVPAYYTLAIVTLLWSSAAMVEAQVYVISGTIGQWYFSKGDSPPKRGIRTSLRNAFGPSSGTICLSGLLIFIVRMVRVAVDSAKREDSTGIVNLILRTC VNALLSAIEFLNKFTINFVAITGESYCTSARMAYEVLKRNLLSAVFVEVISTRILGGITFVLSAVYAIAVCAILKGATNLGTDSYYVAILAWALLIVVLG FLVHVLDNVIDTIYMCYAIDRDRGEVYKSDVHEVYVHLPISRNNRPSLSPRTSAVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38640			Plasma-membrane choline transp...		Lus10025051 [exp]	0	1
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	4.2	0.8538
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	8.3	0.8611
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	13.0	0.8568
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10036260 [exp]	13.0	0.8368
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10033609 [exp]	15.4	0.8460
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	21.7	0.8364
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	28.2	0.8268
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	31.6	0.8298
AT5G23760			Copper transport protein famil...		Lus10039224 [exp]	31.7	0.8197
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	39.4	0.8298

Compare expression of checked genes

Lus10025051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.