Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34960 312 / 1e-107 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 242 / 4e-80 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 229 / 5e-75 ROC7 rotamase CYP 7 (.1) AT3G55920 217 / 4e-70 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 201 / 1e-63 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT4G38740 194 / 9e-62 ROC1 rotamase CYP 1 (.1) AT2G21130 192 / 7e-61 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 190 / 3e-60 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 184 / 5e-58 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G16600 182 / 4e-57 ROC3 rotamase CYP 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018238 [exp] 239 / 4e-79 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 239 / 8e-79 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 235 / 2e-76 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 219 / 5e-71 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10030408 [exp] 214 / 6e-68 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10036180 [exp] 209 / 8e-67 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10011330 [exp] 197 / 7e-62 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10012167 [exp] 194 / 8e-62 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10007579 [exp] 194 / 1e-61 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173500 [exp] 316 / 5e-109 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G132800 [exp] 311 / 3e-107 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G046500 [exp] 236 / 6e-78 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.010G189000 [exp] 233 / 3e-76 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G251700 [exp] 229 / 5e-75 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.009G130100 [exp] 194 / 5e-62 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 193 / 1e-61 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 192 / 3e-61 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 190 / 3e-60 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 188 / 2e-59 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10025052 pacid=23167862 polypeptide=Lus10025052 locus=Lus10025052.g ID=Lus10025052.BGIv1.0 annot-version=v1.0 ATGCCTGAAGTGGGCATTCTTCTATGCGAACTTGAGGTTAATTCCCAGAGGTTTGCTGCTGCCACTGTCGTGCAGTCTGTCTTGTCTTGTGCTGATGATA GCTCACAAGTAGAATATGAGATCACTCATAGAGTATACTTGGATATTGATATCGAGGAACAACGTTTAGGTAGGATCGTTATTGGATTATACGGTCAGGT TGTACCGAAAACTGTAGGGATCTCTACAGCATGTGTTCATGTTTTGGTTTCATATTCTAAGCTTGGTGTTTCTGTGTTTGCAGAAAACTTCAGGGCATTG TGTACAGGCGAGAAAGGCGAGGGTACAAGTGGAAAACCTCTCCACTACAAAGGGACACCACTCCACCGTATTGTATCCGGCTTCGTGATCCAGGGCGGTG ACATAGTCCACGGAGATGGCAAGGGAAGCGATTCCATCTATGGCAAAACATTTCCCGACGAAAATTTCAAGATCAAACACGCGCACGCAGGTGTTGTTTC CATGGTAAATTCAGGCCCAGATTCAAATGGCTCCCAGTTTTTCATCACCACCATCAAATCCAGCTGGTTGGATGGGGAGCATGTTGTGTTTGGGAAGGTG ATTCAGGGGATGGATTATGTATATGCAATTGAAGGTGGAGCAGGAACTTATAGTGGGAAACCCAGGAAGAAAGTTGTTATTGCCGACTCTGGAGAAATAC CAAAAGACAAACCATCTGGCCATGTGCTATGTTCACATGACATCAAGACCTTGGCTCCTGCCAGTCTTTGTTACGCTGCAGCGAGGTTAACTCCGAAGCT GTTGAACTTCAGTTTTCAAACCGGGTATTTGTTTAAGCAGATCAGATGTGCTACAGGAGTAGGTAGTGCGATTTTCGAGATTTCGAACTTGGAATCTCCA AGCTCGCATCCTAGTTTTACTTCACTCTTCAGAACGAGATGA
AA sequence Show only first row Show all	>Lus10025052 pacid=23167862 polypeptide=Lus10025052 locus=Lus10025052.g ID=Lus10025052.BGIv1.0 annot-version=v1.0 MPEVGILLCELEVNSQRFAAATVVQSVLSCADDSSQVEYEITHRVYLDIDIEEQRLGRIVIGLYGQVVPKTVGISTACVHVLVSYSKLGVSVFAENFRAL CTGEKGEGTSGKPLHYKGTPLHRIVSGFVIQGGDIVHGDGKGSDSIYGKTFPDENFKIKHAHAGVVSMVNSGPDSNGSQFFITTIKSSWLDGEHVVFGKV IQGMDYVYAIEGGAGTYSGKPRKKVVIADSGEIPKDKPSGHVLCSHDIKTLAPASLCYAAARLTPKLLNFSFQTGYLFKQIRCATGVGSAIFEISNLESP SSHPSFTSLFRTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	0	1
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	1.0	0.8626
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	5.5	0.8591
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10043083 [exp]	8.7	0.8243
AT1G09920			TRAF-type zinc finger-related ...		Lus10028213 [exp]	9.8	0.8464
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	12.4	0.8233
AT5G12240			unknown protein		Lus10026824 [exp]	13.9	0.8438
AT5G22280			unknown protein		Lus10016983 [exp]	14.1	0.7981
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10006335 [exp]	14.4	0.8287
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	16.4	0.8511
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	17.9	0.8440

Compare expression of checked genes

Lus10025052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.