Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34950 651 / 0 Major facilitator superfamily protein (.1) AT2G16660 645 / 0 Major facilitator superfamily protein (.1) AT1G80530 286 / 3e-89 Major facilitator superfamily protein (.1) AT2G28120 260 / 1e-79 Major facilitator superfamily protein (.1) AT2G39210 259 / 1e-78 Major facilitator superfamily protein (.1) AT5G50520 244 / 1e-73 Major facilitator superfamily protein (.1) AT5G50630 244 / 1e-73 Major facilitator superfamily protein (.1) AT3G01930 244 / 2e-73 Major facilitator superfamily protein (.1.2) AT5G14120 241 / 3e-72 Major facilitator superfamily protein (.1) AT1G74780 220 / 1e-64 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034491 [exp] 885 / 0 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 295 / 1e-92 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 291 / 2e-91 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 290 / 4e-91 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 287 / 8e-90 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 283 / 2e-88 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 251 / 1e-75 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035203 [exp] 249 / 3e-75 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042170 [exp] 239 / 9e-72 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173400 [exp] 709 / 0 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 699 / 0 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 588 / 0 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 307 / 3e-97 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 291 / 2e-91 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 274 / 8e-85 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 255 / 3e-77 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G329100 [exp] 249 / 6e-75 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G006400 [exp] 243 / 3e-73 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 242 / 7e-73 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10025053 pacid=23167811 polypeptide=Lus10025053 locus=Lus10025053.g ID=Lus10025053.BGIv1.0 annot-version=v1.0 ATGGGACTGATAACCACCGGCAAATCCTCCATGACACCGTCCGCCGACACCCTCAAATGGCTCGGCCTAGTCACAGCAATCTGGGTCCAAGCAATCTCCG GCAACAACTACACCTTCGCCAACTACTCCCACTCCCTCAAGTCCCTAATGAACCTCAACCAGCTCCAGCTCAACAACCTATCCGTCGCCAAGGACGTCGG CAAGGCCTTCGGTCTCCTCGCCGGACTCGCCTCCGACCGCTTCCCGACCTGGCTCCTCCTCCTCATCGGCTCAATCGAAGGCCTCATCGGCTACGGCGTC CAATGGCTGGTCGTCAGCCAGAGAATATCCCCAATCCCTTACTGGCAGATGTGCGTCTTCCTCTGCCTCGGCGGGAACTCGACCACCTGGATGAACACAT CCGTCCTCGTCACCTGCATCCGTAACTTCCGCAGAAACCGCGGCCCGGTTTCCGGGATTTTGAAAGGATTCGTCGGGTTGAGCACTGCCATCTTCACTGA CCTCTGCACCGCTTTCTTCTCCGAAGATCCCGGAACTTTTTTGCTCATGCTTGCGCTCGTTCCTTTCGGAGTCTGTTTGGCTGCGATCTTCTTCCTCCGT GAGCTCCCCCCGGCGAACACTCTCGCTGAGGAGAAGGAAGAGGCCAAGTACTTCTCAGCATTCAATGTCGTCGCAGTCGTCGTCGCCGTCTTCCTTTTAG CGTACGATTTCACCCCCAATCCTTCTCGATTCGTCTCTGTAGGGTTCGGATTCACTCTCTTAGCACTCCTCGCATCTCCGATTGCGGTTCCGATTCATAA ATTCGTTAAAGGAATCAAGATCGCTGCTCTGAACAAGGCCGACATTGAGCGGAATCAGGTCGGAGTCGAGGAGCCGCTTCTAATTGACGAACAAAATTCC GAATCTGCTGCGGTTGCGGCGGTGACGGCGGAGGATGTGGAGGCGGAGGAGGAGGAGAAGAGGAAGCCGGTGATCGGAGAAGAGCACACGATAGTGGAGG CGTTGAGTACGGTGGATTTCTGGATTCTGTTTGTTTCGTTTCTCTGCGGCGTTGGTACTGGTTTGGCGGTGATGAACAATACGGGGCAAATTGGGTTGGC TCTTGGATACGTCGACGTTTCGATCTTCGTCTCGCTGACCAGCATTTTCGGTTTCTTTGGGCGGATCGTCTCCGGATCGGTCTCGGAGTACTTTGTCAAG AAATCAGGAACACCAAGGCCACTATGGAACGCAGCCTCACAAATACTGATGGCAGTAGGATACATCCTCCTCGCCCTGGCCTTGCCCGGATCACTCTACG TGGGCTCGATCGTCGTCGGAATCTGCTACGGCGTGCGATTGGCCGTTTCGGTTCCGACAGCTTCAGAACTCTTTGGACTCAAGTACTACGGCCTGATCTA CAACATTCTGATCCTCAATCTCCCTCTAGGCTCCTTTCTATTCTCTGGCCTGCTGGCGGGACTTCTGTACGACGCGGAGGCTACTCCGGTCCCCGGAGGA GGGAACACTTGCGTCGGTGCGCATTGCTACAGGATGGTGTTCATTGTCATGGCGGGTGCTTGCATTGTTGGGTTTGCTCTTGATGTGTTGCTGGCTGTTA GGACCAAGGCGGTTTATAACAGGATTTACTCGAGTAGGAAGTCGAGGAAGATCGGTAGCTAG
AA sequence Show only first row Show all	>Lus10025053 pacid=23167811 polypeptide=Lus10025053 locus=Lus10025053.g ID=Lus10025053.BGIv1.0 annot-version=v1.0 MGLITTGKSSMTPSADTLKWLGLVTAIWVQAISGNNYTFANYSHSLKSLMNLNQLQLNNLSVAKDVGKAFGLLAGLASDRFPTWLLLLIGSIEGLIGYGV QWLVVSQRISPIPYWQMCVFLCLGGNSTTWMNTSVLVTCIRNFRRNRGPVSGILKGFVGLSTAIFTDLCTAFFSEDPGTFLLMLALVPFGVCLAAIFFLR ELPPANTLAEEKEEAKYFSAFNVVAVVVAVFLLAYDFTPNPSRFVSVGFGFTLLALLASPIAVPIHKFVKGIKIAALNKADIERNQVGVEEPLLIDEQNS ESAAVAAVTAEDVEAEEEEKRKPVIGEEHTIVEALSTVDFWILFVSFLCGVGTGLAVMNNTGQIGLALGYVDVSIFVSLTSIFGFFGRIVSGSVSEYFVK KSGTPRPLWNAASQILMAVGYILLALALPGSLYVGSIVVGICYGVRLAVSVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGLLYDAEATPVPGG GNTCVGAHCYRMVFIVMAGACIVGFALDVLLAVRTKAVYNRIYSSRKSRKIGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34950			Major facilitator superfamily ...		Lus10025053 [exp]	0	1
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	4.5	0.8671
AT4G29780			unknown protein		Lus10027622 [exp]	4.7	0.9200
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10022795 [exp]	5.7	0.8381
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	8.1	0.8989
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	8.1	0.9087
AT1G07160			Protein phosphatase 2C family ...		Lus10026381 [exp]	14.5	0.8813
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	15.9	0.8780
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	17.1	0.8815
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	19.3	0.8471
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	19.5	0.8495

Compare expression of checked genes

Lus10025053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.