Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38650 677 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33840 404 / 8e-135 Glycosyl hydrolase family 10 protein (.1) AT4G33830 396 / 7e-132 Glycosyl hydrolase family 10 protein (.1) AT4G33860 394 / 3e-131 Glycosyl hydrolase family 10 protein (.1) AT4G38300 357 / 6e-121 glycosyl hydrolase family 10 protein (.1) AT4G33820 308 / 4e-98 Glycosyl hydrolase superfamily protein (.1) AT4G33810 301 / 8e-96 Glycosyl hydrolase superfamily protein (.1) AT1G58370 306 / 1e-93 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT2G14690 290 / 7e-91 Glycosyl hydrolase superfamily protein (.1) AT1G10050 288 / 2e-86 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034490 [exp] 913 / 0 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 396 / 9e-132 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 390 / 1e-129 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 385 / 9e-128 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 368 / 8e-118 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10007243 [exp] 291 / 5e-87 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 288 / 6e-86 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007242 [exp] 278 / 4e-84 AT1G58370 1016 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 277 / 5e-84 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173300 [exp] 763 / 0 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087900 [exp] 406 / 6e-136 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 365 / 4e-120 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 357 / 6e-117 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 336 / 5e-109 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.002G113132 [exp] 312 / 9e-96 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 295 / 8e-91 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10025054 pacid=23167857 polypeptide=Lus10025054 locus=Lus10025054.g ID=Lus10025054.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTCTTATGGGCTCCATCTCTCTTCTCCTCTGTTTCTCCTTCGCCTCTGCCTTTGATGGGCCTCTGTACGATCATACAGCTTACATTGAGT GCCAAGGGACGCCGGAACAGCCGCTATACGGCGGAGGGATTCTCAAGCACCGGCGGCCAGTACAGTGGAAGGACAATGGAGATTCCTCGCCGGCTTTTGT TTTGAGTAATATTACTCAAGGCTCCTTTTACTCTTTCTCAGTATGGGTGAAGGTAAAAGCTGGAAAACCAACAACTGTGACAGCAAGACTAAAGACAGAC GAGGCTACATACGGCTGCATAGGTAGTGTTTTGGCAAAGAAGAACTGCTGGTCTTTTCTCAAAGGTGGATTCGTCCTCGAAGAAGAACCCTCAGCTTCCA CCATTCTGTATCTCCAGAGTCCATCACAGAAGAGCCTTGCGGTTTCGATCACGAGCGGGTCATTACAGCCATTTACATCAGAGGAATGGACGGCTAATCA GCAGAACATTATAGACACTCAAAGGAAACGTGCTGTGACAGTTCATGTATCGGATAGCACAGGAAACAGGCTAAAAGGAGCTTCCATCAAGGTCCAGCAA TTGTCCAAAGACTTCCCTTTCGGATCCGCCATCTCCAAGACCATCCTGGGAAACCATCCGTATCAGAAATGGTACCTGGAGAGATTCAACGCGGCGGTGT TCGAGAACGAGCTGAAATGGTACGCCACGGAGCCCAAACAGGGCCAGCTAAACTACACGATACCAGACAAGATGATGGAGTTCGTCAGATCCAACGGATT ACTAACCAGAGGCCACAACATCTTCTGGGAAGATCCCAAATACACCCCCGAATGGGTGAAGCAACTCGCCGGCAAACAACTCCACGCCGCCGTCGAATCA AGAATCCGGAGCCTGATGAACAAGTACAGGGAAGAGTTCGTCAACTGGGACGTCAGCAACGAGATGCTCCACTTCAATTTCTACGAAGAAAAATTGGGCC GCGACGCCACATTGCACTTCTTCAAGACCGCTCACGAATCCGACCCCTTGGCGACCCTGTTCATGAACGACTACAACGTCGTCGAGTCCTGCACCGATCT CAACTCGACGGTGGACAATTACATCGGTAGGTTGAAGGAGCTGCAGCAAGGCGGAGCTACGATGGACGGGATCGGCCTCGAGAGCCACTTCTCGGAGCCG AACCCGCCGTTGACTAGAGCGATCATCGATAAATTAGCGGTGCTGAATCTGCCCATTTGGCTCACCGAAGTCGACATCAGCAAGAAGTTCGATTACCAAA CCCAGGCAAGGTATTTGGAGAAAGTCCTGAGAGAAGGGTTTTCTCACCCGGCGGTGGACGGGATAATGCTGTGGACGGCGCTTGATACCAAGGGCTGCTA CGAGATGTGCTTGACGGATAACGATATGAAAAACTTGCCGGCGGGGGACACAGTGGATAAGTTGCTGAGAGAGTGGAGCACCGGGGAGGTGAATGGGAGC TCCGACGAGCGAGGGTCGTATAGCTTTTATGGGTACTTGGGAGAGTACAGTGTGAAGGTGGAGTATGGCGGTAGAGTAGTGAATTCGACATTAGCTCTTA GTAAAGGTGATGAGACTAAACAGTTGAGTATTCGAGTTTAG
AA sequence Show only first row Show all	>Lus10025054 pacid=23167857 polypeptide=Lus10025054 locus=Lus10025054.g ID=Lus10025054.BGIv1.0 annot-version=v1.0 MASSLMGSISLLLCFSFASAFDGPLYDHTAYIECQGTPEQPLYGGGILKHRRPVQWKDNGDSSPAFVLSNITQGSFYSFSVWVKVKAGKPTTVTARLKTD EATYGCIGSVLAKKNCWSFLKGGFVLEEEPSASTILYLQSPSQKSLAVSITSGSLQPFTSEEWTANQQNIIDTQRKRAVTVHVSDSTGNRLKGASIKVQQ LSKDFPFGSAISKTILGNHPYQKWYLERFNAAVFENELKWYATEPKQGQLNYTIPDKMMEFVRSNGLLTRGHNIFWEDPKYTPEWVKQLAGKQLHAAVES RIRSLMNKYREEFVNWDVSNEMLHFNFYEEKLGRDATLHFFKTAHESDPLATLFMNDYNVVESCTDLNSTVDNYIGRLKELQQGGATMDGIGLESHFSEP NPPLTRAIIDKLAVLNLPIWLTEVDISKKFDYQTQARYLEKVLREGFSHPAVDGIMLWTALDTKGCYEMCLTDNDMKNLPAGDTVDKLLREWSTGEVNGS SDERGSYSFYGYLGEYSVKVEYGGRVVNSTLALSKGDETKQLSIRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	0	1
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10017892 [exp]	1.7	0.8001
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	5.5	0.6934
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	7.7	0.6695
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	8.0	0.7089
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Lus10007444 [exp]	9.6	0.7151
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	9.9	0.6742
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	13.1	0.7311
AT3G62550			Adenine nucleotide alpha hydro...		Lus10010013 [exp]	14.7	0.6775
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	16.0	0.6358
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	17.4	0.6591

Compare expression of checked genes

Lus10025054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.