Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38660 335 / 1e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 303 / 3e-104 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G20030 269 / 5e-90 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 259 / 4e-86 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 258 / 4e-85 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 251 / 9e-84 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38670 248 / 6e-82 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G75030 243 / 9e-81 ATLP-3 thaumatin-like protein 3 (.1) AT1G19320 243 / 1e-80 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 243 / 2e-80 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041899 [exp] 325 / 3e-111 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 322 / 2e-110 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 304 / 2e-103 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 296 / 3e-100 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10017265 [exp] 255 / 4e-84 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 248 / 5e-82 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 248 / 8e-82 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10033136 [exp] 246 / 7e-81 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 244 / 8e-80 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132500 [exp] 356 / 1e-123 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 354 / 4e-123 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 327 / 1e-112 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 323 / 4e-111 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 317 / 2e-108 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.005G240900 [exp] 275 / 3e-92 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 266 / 7e-89 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 265 / 1e-88 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 253 / 9e-84 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.012G004800 [exp] 253 / 1e-83 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10025055 pacid=23167744 polypeptide=Lus10025055 locus=Lus10025055.g ID=Lus10025055.BGIv1.0 annot-version=v1.0 ATGGGAGCGACGTTCACCTTCGTAAACCGATGCGACTACACACTCTGGCCAGGGATTCTAGCCAATGCCGGAAGTCCTAAGCTCGAAAGCACCGGATTCT CCCTTCCACAAGGTTCAACCCGCGCCTTCCAAGCTCCGACCGGCTGGTCGGGCAGGTTCTGGGCACGAACCGGATGCACATTCGACGATTCCGGTTCCGG ATCTTGCCAGACCGGGGACTGCGGGTCGGGTCTCGTCGAGTGCAATGGGCTTGGAGCCGCTCCTCCGGCCACACTCGCGGAGTTCACCCTCGGAAGCGGC GGCGGGATGGACTTCTACGACGTCAGCCTCGTCGACGGGTACAACGTCCCCATGGTCGTGGAAGGGAGCGGCGGGTCTGGTCCTTGTGGGTCGACGGGTT GTACCACAGATCTGAACCGGCAGTGCCCCGATGAGCTGAAGTCCGGGGTTGGGAGTGCGTGTAAGAGCGCGTGCGAGGCGTTTGGAAGCCCCGAGTATTG TTGTAGCGGCGCGTTCAACACGCCGGCGACTTGTAGGCCGTCGGTTTACTCGGCGATGTTTAAAGCCGCTTGTCCCAAGTCCTATAGCTATGCGTACGAT GATGCTACTAGTACTTTTACATGTACCGGAGCTGATTATACCATCACATTTTGCCCCTCCTCGCCTAGAGGAGGGCAGACAATGTTGGCAGATGGATGGT TAGCTGGTTTAGCCATGGGAGGATCAGAAAGAAGAGCTTCTTCTTCTTCTTCTCTGTGTGGAATGGTGGTTACTTCTGCTGTTGTGCTACTGCTGGTTGG TTGTTCTTCTGGTCATTAG
AA sequence Show only first row Show all	>Lus10025055 pacid=23167744 polypeptide=Lus10025055 locus=Lus10025055.g ID=Lus10025055.BGIv1.0 annot-version=v1.0 MGATFTFVNRCDYTLWPGILANAGSPKLESTGFSLPQGSTRAFQAPTGWSGRFWARTGCTFDDSGSGSCQTGDCGSGLVECNGLGAAPPATLAEFTLGSG GGMDFYDVSLVDGYNVPMVVEGSGGSGPCGSTGCTTDLNRQCPDELKSGVGSACKSACEAFGSPEYCCSGAFNTPATCRPSVYSAMFKAACPKSYSYAYD DATSTFTCTGADYTITFCPSSPRGGQTMLADGWLAGLAMGGSERRASSSSSLCGMVVTSAVVLLLVGCSSGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	0	1
					Lus10029272 [exp]	1.0	0.9196
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	3.9	0.8442
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	4.5	0.8355
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	4.9	0.8510
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	4.9	0.8618
AT3G15040			Protein of unknown function, D...		Lus10016988 [exp]	5.7	0.8483
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	6.5	0.8413
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	6.7	0.8362
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	8.9	0.8392
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	9.9	0.8299

Compare expression of checked genes

Lus10025055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.