Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34940 948 / 0 ARO1 armadillo repeat only 1 (.1) AT5G66200 816 / 0 ARO2 armadillo repeat only 2 (.1) AT4G36030 721 / 0 ARO3 armadillo repeat only 3 (.1) AT3G26600 190 / 4e-52 ARO4 armadillo repeat only 4 (.1) AT1G02690 46 / 7e-05 IMPA-6 importin alpha isoform 6 (.1.2) AT2G23140 44 / 0.0004 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041905 [exp] 827 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10028452 [exp] 821 / 0 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10027837 [exp] 636 / 0 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 431 / 1e-148 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10037086 [exp] 347 / 1e-114 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10005065 [exp] 244 / 2e-77 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10034486 [exp] 204 / 9e-63 AT4G34940 163 / 2e-48 armadillo repeat only 1 (.1) Lus10004620 [exp] 209 / 8e-59 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10026695 [exp] 209 / 1e-58 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172500 [exp] 988 / 0 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 956 / 0 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.005G113000 [exp] 884 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.015G082800 [exp] 211 / 1e-59 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.010G045500 [exp] 208 / 2e-58 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.002G009900 [exp] 51 / 3e-06 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.005G144700 [exp] 44 / 0.0003 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 44 / 0.0006 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.014G158700 [exp] 43 / 0.0006 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.007G023700 [exp] 43 / 0.0007 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10025059 pacid=23167757 polypeptide=Lus10025059 locus=Lus10025059.g ID=Lus10025059.BGIv1.0 annot-version=v1.0 ATGGCGGACTTCGTGAAGGAGATCCTAGCGCGGCCTATCCAATTAGCGGACCACGTCACGAAGGCCGCCGACGAGGCCCAATCCTTCAAACAAGACTGCC AGGAGATCAAATCCAAAACAGAGAAGCTCTCCACCTTACTCCGTCAGGCGGCGCGTGCGAGCAACGACCTTTACGAGCGCCCCACGCGCCGCATCATCGA CGACACTGAGCAGGTCCTCGACAAAGCTCTAACCCTAGTGATAAAATGTCGATCCAGTGGCATAATGAAGCGGATTTTCAACATCATCCCTGCCGCCGCC TTCCGAAAGCTCACTATCCAGCTGGAAAACTCGATCGGCGACGTCTCCTGGCTCCTCCGCGTCTCCGCATCCGCCTCCGGTGATGACTGCGACGATGAGT ACTTGGGGCTTCCACCGATTGCAGCCAATGAACCAATCCTCTGTCTGATTTGGGAACAGATAGCGATTCTCTACACTGGATCTTCCGAAGAGAGATCCGA CGCGGCGGCTTCGTTGGTTTCGTTAGCGAGGGATAATGATAGGTACGGGAGATTGATAATAGAAGAAGGAGGGGTTCCTCCATTGCTGAAATTGGCTAAA GACGGGAAGAAGGAAGGTCAGGAGAATGCTGCAAGGGCGATTGGGTTGCTGGGTCGGGACCCGGACAGCGTGGAAGCCATTGTTAACGCCGGCGTATGCA ATGTATTTGCGAAAATGCTCAAAGAAGGTCACATGAAGGTTCAGGCGGTTGTGGCTTGGGCGGTTTCCGAGTTGGCCGCTCATCATCCGAAATGTCAGGA TCATTTTGCTCAGGGGAATATAATTCGGTTCTTGGTTAGCCATCTCGCGTTTGAGACGGTTGAGGAGCATAGTAAATACACGATTTCGAATAAGCAGGCG TCGATCCATTCGGTTTTGGTCGCAAGCAATGATTTGAACGACAGAATCGGAGATCCATCCGAAGAGGATTTGACTGTTGTGAAGATTGCTCACCCGATGA ATAATCAAAACCCGAGTCAAATGCATAACGTTGTCACGACCACTCTTGGCAATACTCATCCAGTACCGAACAATGGCAATAACAAGCCTGGACATGAGAT GGCTATAGCCACGAAATCAGGACAGGAATCGGGACATAACAAGGGTGAGAGTCTTGGAACCCACGGTAATGGGGATGGGAAAGGGAGTGGAAAGGGAAAA CATCGTAAACCTAGTCATAATTCTAAAGGAAAACGACAACGTCAAAACCATGTACAACTATCTGGAACGAGCATCAAGAAGAGGGAGCAGGAGGATCCCG CTACTAAAGCCAACATGAAAGCCATGGCGGCTAGGGCATTGTGGCAACTCGCGAGAGGAAACGTTATAATATGTCGAAGCATAACAGAGTCACGAGCGTT GCTCTGCTTTGCGATCTTGTTAGAAAAGGGCGAGGAAGAGGTACAATCATACTCCTCGATGGCATTGATGGAGATAACCACGGTGGCAGAGCAGCACGCT GACTTACGACGGTCAGCGTTCAAGCCCACATCCCCGTCTGCAAAAGCAGTGGTGGATCAACTCCTCAAAGTGATCGAGGCAGGCGAATCAGACCTAATGG TACCCTGCATCCGCGCAATCGGGAACCTGGCACGAACATTTCGGGCCACCGAGACTAGAATGGTCGGGCCGTTAGTGAAACTGTTGGACGAGAAGGACCT GGACGTGATGATGGAGGCAGCGGTGGCGCTCAACAAGTTCGCGTCCACCGAGAACTTCCTATGCGTGAACCATTCGAAAGTCGTGATTAGTGCAGGAGGG ACAAAGCATTTGATTCAACTGGTCTACTTCGGGGAGCAGGTGATCCAAACTCCTTCGCTTATACTCCTGTGTTACATCACCATGAATTGTCCCGACAGCG ACGTTCTCGCCAACGAGGAAGTGTTGATCGTGCTTGAGTGGTCGATGAAGCAAGCCCACTTGGTGGAGAATGTCACGATTCAGAACGTGTTGCCGGAGGC CAAGAGTAGATTGGAGCTCTATCAATCGAGAGGGTCAAGAGGGTTCCATTAA
AA sequence Show only first row Show all	>Lus10025059 pacid=23167757 polypeptide=Lus10025059 locus=Lus10025059.g ID=Lus10025059.BGIv1.0 annot-version=v1.0 MADFVKEILARPIQLADHVTKAADEAQSFKQDCQEIKSKTEKLSTLLRQAARASNDLYERPTRRIIDDTEQVLDKALTLVIKCRSSGIMKRIFNIIPAAA FRKLTIQLENSIGDVSWLLRVSASASGDDCDDEYLGLPPIAANEPILCLIWEQIAILYTGSSEERSDAAASLVSLARDNDRYGRLIIEEGGVPPLLKLAK DGKKEGQENAARAIGLLGRDPDSVEAIVNAGVCNVFAKMLKEGHMKVQAVVAWAVSELAAHHPKCQDHFAQGNIIRFLVSHLAFETVEEHSKYTISNKQA SIHSVLVASNDLNDRIGDPSEEDLTVVKIAHPMNNQNPSQMHNVVTTTLGNTHPVPNNGNNKPGHEMAIATKSGQESGHNKGESLGTHGNGDGKGSGKGK HRKPSHNSKGKRQRQNHVQLSGTSIKKREQEDPATKANMKAMAARALWQLARGNVIICRSITESRALLCFAILLEKGEEEVQSYSSMALMEITTVAEQHA DLRRSAFKPTSPSAKAVVDQLLKVIEAGESDLMVPCIRAIGNLARTFRATETRMVGPLVKLLDEKDLDVMMEAAVALNKFASTENFLCVNHSKVVISAGG TKHLIQLVYFGEQVIQTPSLILLCYITMNCPDSDVLANEEVLIVLEWSMKQAHLVENVTIQNVLPEAKSRLELYQSRGSRGFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10025059 [exp]	0	1
AT1G53800			unknown protein		Lus10037460 [exp]	4.2	0.8074
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	6.4	0.8080
AT4G21970			Protein of unknown function, D...		Lus10020043 [exp]	11.2	0.7999
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	12.0	0.8053
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10007058 [exp]	14.6	0.7056
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	17.5	0.8002
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	20.1	0.7983
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	21.0	0.7648
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	23.3	0.7713
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	25.5	0.7916

Compare expression of checked genes

Lus10025059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.