Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21070 568 / 0 FIO1 FIONA1, methyltransferases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034481 [exp] 318 / 3e-106 AT2G21070 214 / 4e-67 FIONA1, methyltransferases (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172100 [exp] 669 / 0 AT2G21070 595 / 0.0 FIONA1, methyltransferases (.1.2.3) Potri.009G131700 [exp] 454 / 3e-159 AT2G21070 387 / 7e-135 FIONA1, methyltransferases (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05971 [flax] [poplar] Methyltransf_10 RNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10025061 pacid=23167758 polypeptide=Lus10025061 locus=Lus10025061.g ID=Lus10025061.BGIv1.0 annot-version=v1.0 ATGCCGGATTCATTCAGAGCCTGTTTGCCTACGTCTACTATAGGAAGTGGAAAAACTATGCCGAGCAAGAAGAACAAGCGCAAGAGGCCGGAGCGGCCGA CGATCCACCCGCGAAACAAGTACGCCGATAGTCCGCCGGACTTCGCTCGGTTGGCGTCTCTCTACCCTTCTTTCGAGCCCTTCGTTTTCTACTCCCGCGA CGGCCACCCTAGAATTGACTGGACCGACTTCAACGCCACTAGGGAGCTCACCAAGGTCTTGCTCCTCCACGATCACACCATCAATTGGTGGATACCTGAT GGTCAGCTCTGCCCAACTGTGCCTAACAGATCGAACTACATTCACTGGATCGAAGATCTTCTGTCGTCGGAGATCATTCCTAAGAATCGTATGGATGGAG ATGTCGTGAGAGGGTTTGATATTGGCACTGGAGCTAACTGCATTTACCCATTGCTTGGTGCTTCCCTTCTGGGATGGAGTTTTGTGGGCTCAGATATTAC TGATGTTGCATTAGAGTGGGCAGAGAGAAATGTCAGAAACAATCCACGAGTTGCAGAACTCATTGAGATCAGAAAGGTTCCGGATGATGCAGAGGTAAAG CTTCAGCTCTCTACTTCTTTAGAATCGCCCACTGTTGCAGATGCTCGGTATTGCGGTCCACCTATACTTCTTGGGGTAGTCAAAGAGGGTGAGAAGTTTG ATTTCTGCATGTGCAATCCTCCGTTCTTCGAGAGCATGGAGGAAGCAGGACTGAATCCGAAAACTGCTTGTGGTGGCACTCTTGAGGAGATGGTTTGTCA TGGTGGGGAACAAGCATTCGTTATTCGGATGATTGAAGATAGTGTTGTGTTGAACGATTCCTTTAGGTGGTATACTTCAATGCTTGGGAGGAAAATAAAC CTCAAATTGCTAACCTCAAAGCTTCGCGAAGTGGGAGCAACTATTGTGAAGACTACCGAGTTTGTGCAAGGTCAAACATGTAGATGGGGCTTGGCTTGGT CTTTTCTGCCTCCAGCTAGGAAGATCATACCAGCAGTTTCTGCGGTTGTGAGAACCAACATTAGTTTCATGCTTGAGAGGGTTCAGCGCCAATTCAGTGC CATACATGTACTACAATCAGTTGAGTCATTATTTCAGACCAGTGGTGCATCCTGTAAGCTGAATGCCGCATCATTCACATGCGATATCACTACAACATTG GTTCATTGTGAAGGATTCCTTAAGTACGATGCAAATTGCCTGAACGAACCTTCCAACTGCAAACCTATAGAGAATGCGCCTTCTTCTAACAATTTGATCT TTCGAATTTCGATCTTTCAGCAACAACCTGACACCCTATTGGTAAAAGCATCACTACATAACAAAGACTGCCCCTTTGCAGGAATGTTCTCTTCAGTAAT CCATAAGCTGGAGGAAGTCATGAACCAAAGATTCTGTAGATCAAGAGACTCTGCCAAATGA
AA sequence Show only first row Show all	>Lus10025061 pacid=23167758 polypeptide=Lus10025061 locus=Lus10025061.g ID=Lus10025061.BGIv1.0 annot-version=v1.0 MPDSFRACLPTSTIGSGKTMPSKKNKRKRPERPTIHPRNKYADSPPDFARLASLYPSFEPFVFYSRDGHPRIDWTDFNATRELTKVLLLHDHTINWWIPD GQLCPTVPNRSNYIHWIEDLLSSEIIPKNRMDGDVVRGFDIGTGANCIYPLLGASLLGWSFVGSDITDVALEWAERNVRNNPRVAELIEIRKVPDDAEVK LQLSTSLESPTVADARYCGPPILLGVVKEGEKFDFCMCNPPFFESMEEAGLNPKTACGGTLEEMVCHGGEQAFVIRMIEDSVVLNDSFRWYTSMLGRKIN LKLLTSKLREVGATIVKTTEFVQGQTCRWGLAWSFLPPARKIIPAVSAVVRTNISFMLERVQRQFSAIHVLQSVESLFQTSGASCKLNAASFTCDITTTL VHCEGFLKYDANCLNEPSNCKPIENAPSSNNLIFRISIFQQQPDTLLVKASLHNKDCPFAGMFSSVIHKLEEVMNQRFCRSRDSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	0	1
AT2G20830			transferases;folic acid bindin...		Lus10018559 [exp]	4.9	0.7802
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	8.7	0.7823
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	10.1	0.7882
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	10.2	0.7990
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	14.1	0.7672
AT5G49530			SIN-like family protein (.1)		Lus10041724 [exp]	15.1	0.7936
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10017091 [exp]	16.6	0.7470
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	19.6	0.7750
					Lus10027225 [exp]	19.7	0.7637
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	26.5	0.7632

Compare expression of checked genes

Lus10025061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.