Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38690 520 / 0 PLC-like phosphodiesterases superfamily protein (.1) AT4G34920 449 / 5e-160 PLC-like phosphodiesterases superfamily protein (.1) AT4G34930 413 / 1e-144 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034483 [exp] 638 / 0 AT4G38690 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172000 [exp] 522 / 0 AT4G38690 558 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G131600 [exp] 510 / 0 AT4G38690 544 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain
Representative CDS sequence Show only first row Show all	>Lus10025062 pacid=23167813 polypeptide=Lus10025062 locus=Lus10025062.g ID=Lus10025062.BGIv1.0 annot-version=v1.0 ATGGGTGCTCACGTTTCCACTCAGATCGCCCGCCGGAAGGCGATCTCCACTGAGAAACAGACCCTCTGCGACCTCCAAGGAAACTGCGGCAACACCTTCC CTGGCTCCGATTACGTCCCACAGGACCGGAAAACATGGATGGCCGGAATCGGCCCGGACAAGCTCCGTATCAACCAGATCGTCTGGCCCGGAACCCACGA CTCCGCCACCAACAAGATCGGAATCCCGCTCGTCACCCGCCCCTTCGCGCAATGCCAGTCCCTCTCCATCTACCACCAGCTCTGCCGAGGGACCCGGGTC CTCGACGTCCGGGTCGGGTCGGACAGTCGGGTCTGCCACGGGATTCTGAAGACTTACCACGTCGACGTCGTTCTGGACGACGTCAACAAGTTCTTGTCCG AGACCGAATTGGAGGTGATCGTTCTCGAGGTACGGACGGAGTTCGGCCACGAAGATCCGCCGGAATTTGCGGCCTACCTGGAGGAGAAGTTAGGGGAGCA TTTGATCCGCCACGACGATGCCGTTTTCGGGAAGACTGTGGCGGAGTTGCTTCCGAAGAGAGTGATCTGTATATGGAAGCCGAGGAAGTCTCCGCCGCCG AAACATGGGGATTTGCTGTGGGCCGCGGGGTACTTGAAGGACAATTGGATCGATACGGATCTGCCGTCGACTAAGTTTGAGAGCAATTTGAAGTTCCTGA GCCAGCAGTCGCCGGCGGTAGGGAGAAAGTTTTTTTACAGAGTGGAGAATACTGTGACGCCGCAGCCTGATAATCCGGTGGTGTGTGTGAAGCCGGTGAC TAAGCGGATTCATGGATACGCTAGGCTGTTTATAGTTCAGGCGGTGGAGAAAGGGTGGGGCGATCGGATTCAGATACTGTCGACGGATTTCATTGAGGAG GATTTTGTTGATGCTTGTGCTGGGCTTACTTACGCTAGAGCTGAAGGGAAAGCTTAG
AA sequence Show only first row Show all	>Lus10025062 pacid=23167813 polypeptide=Lus10025062 locus=Lus10025062.g ID=Lus10025062.BGIv1.0 annot-version=v1.0 MGAHVSTQIARRKAISTEKQTLCDLQGNCGNTFPGSDYVPQDRKTWMAGIGPDKLRINQIVWPGTHDSATNKIGIPLVTRPFAQCQSLSIYHQLCRGTRV LDVRVGSDSRVCHGILKTYHVDVVLDDVNKFLSETELEVIVLEVRTEFGHEDPPEFAAYLEEKLGEHLIRHDDAVFGKTVAELLPKRVICIWKPRKSPPP KHGDLLWAAGYLKDNWIDTDLPSTKFESNLKFLSQQSPAVGRKFFYRVENTVTPQPDNPVVCVKPVTKRIHGYARLFIVQAVEKGWGDRIQILSTDFIEE DFVDACAGLTYARAEGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	0	1
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10004106 [exp]	3.5	0.8269
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	4.5	0.8259
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	4.7	0.8335
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	5.3	0.7965
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	6.6	0.8264
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10004977 [exp]	7.5	0.8474
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	13.3	0.7678
AT4G33640			unknown protein		Lus10020463 [exp]	15.0	0.7903
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	15.9	0.7673
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	17.2	0.7646

Compare expression of checked genes

Lus10025062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.