Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 144 / 4e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 144 / 5e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 142 / 2e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 135 / 1e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 135 / 3e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 134 / 6e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 134 / 6e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 133 / 1e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT3G13662 128 / 8e-37 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034482 [exp] 403 / 7e-144 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 234 / 1e-77 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 231 / 2e-77 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 232 / 1e-76 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 226 / 5e-75 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 219 / 1e-71 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 213 / 5e-69 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 207 / 1e-67 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 202 / 2e-65 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 194 / 1e-62 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 168 / 4e-52 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 166 / 3e-51 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 163 / 2e-50 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 161 / 2e-49 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 158 / 1e-48 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 155 / 3e-47 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 155 / 5e-47 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216400 [exp] 153 / 3e-46 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 150 / 4e-45 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10025063 pacid=23167847 polypeptide=Lus10025063 locus=Lus10025063.g ID=Lus10025063.BGIv1.0 annot-version=v1.0 ATGACGACAAAACCCTCCTTAATCGTCGTCGTCGCCATCACAATCGCCCTCTCATCATCGATCCCCTCATTCCTCGCTCAACAGCCCCCGACTCCCTCTC CGGCCGCCGTCAGCTGGGCGACCCGCCTCCCCTCCTCCTCCGGCGGCGACGCCGTCACCAATCTCCAGTTCTACTTCCACGACATCCTCAGCGGGAACAA CCCGACAGCCGTCCAGGTCGCCTCCCCAGCGGCCGGATCCGGGTTCGGATCCATCACGATGGCTGATGACCCGCTCACCGAGACATCCGACCCGAACTCC AAGCTAGTCGGGCGGGCTCAGGGGATCTACGCCTCCGCCTCGCAGTCCACGCTGGCGCTGCTGATGTCGATGAGCTACAGCTTCGTCGATGGGCCATACA GCGGGAGCTCGCTGAGCATATTGGGCCGGAACGAGGTTATGACCCAGGGTCGGGAACTGCCTGTTTTGGGTGGCACGGGGCTGTTCAGGATGGCGCGTGG ATACGCCGTGCTCCAAACGACGTCGGCTAATTCGGCCGGGGACGCCGTCGTGTTTTATAATGTGACGGTCTTTGCCCCTTCGTCTAATGCCCAGAATGAG GCGCTTCCGTTCACTCCCGTTGATGGTGGGAGGAGGAGTGGAGGAGGCGGCGGTGGGAATGCAGGGGATTCTTCGCCGGCGGGTAGAGTGCCGGCGAATG GGTGGGTTGCTGCGGCGGTGGTGGCTGCTGTGGCGTGTGTTTTGTCGATGTGA
AA sequence Show only first row Show all	>Lus10025063 pacid=23167847 polypeptide=Lus10025063 locus=Lus10025063.g ID=Lus10025063.BGIv1.0 annot-version=v1.0 MTTKPSLIVVVAITIALSSSIPSFLAQQPPTPSPAAVSWATRLPSSSGGDAVTNLQFYFHDILSGNNPTAVQVASPAAGSGFGSITMADDPLTETSDPNS KLVGRAQGIYASASQSTLALLMSMSYSFVDGPYSGSSLSILGRNEVMTQGRELPVLGGTGLFRMARGYAVLQTTSANSAGDAVVFYNVTVFAPSSNAQNE ALPFTPVDGGRRSGGGGGGNAGDSSPAGRVPANGWVAAAVVAAVACVLSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	0	1
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	4.4	0.9396
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	7.3	0.9269
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	9.5	0.8987
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	10.1	0.9282
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	12.8	0.9214
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	13.4	0.8751
AT5G56980			unknown protein		Lus10014282 [exp]	14.5	0.8535
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10013148 [exp]	15.0	0.8691
AT2G43630			unknown protein		Lus10013892 [exp]	15.2	0.8797
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	16.0	0.9182

Compare expression of checked genes

Lus10025063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.