Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 165 / 2e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 153 / 1e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 142 / 4e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 136 / 5e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 133 / 9e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 132 / 2e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 131 / 5e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 131 / 5e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT3G13662 129 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034479 [exp] 332 / 2e-118 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 260 / 5e-89 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 258 / 4e-88 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 233 / 9e-79 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 233 / 2e-78 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 232 / 1e-77 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 232 / 1e-77 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 228 / 3e-76 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 217 / 2e-72 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 201 / 1e-66 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 162 / 5e-51 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 161 / 1e-50 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 159 / 3e-50 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 157 / 3e-49 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 154 / 5e-48 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.016G060900 [exp] 154 / 8e-48 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 154 / 1e-47 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 152 / 4e-47 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023600 [exp] 148 / 1e-45 AT5G49040 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10025064 pacid=23167749 polypeptide=Lus10025064 locus=Lus10025064.g ID=Lus10025064.BGIv1.0 annot-version=v1.0 ATGTCTGCACTTCAGGCCCAAACACCACCACCACTCAAATGGGCACAAAGACTGGACTCTGGAACGGGCCCGGAGTCCGTAACCAACCTCCAGTTCTACT TCCACGACATCCTGAGCGGATCCAACCCCACCGCGAAGCGCGTCGTCCAACCCATTGTGGGGACCACCATCACGACCCTCTTTGGAGCGATCGTGATGGC AGACGACCCGCTGACAGAGACATCTGACCCAGGGTCCAAGCTCGTTGGAAGGGCTCAAGGAATGTACAGCTCATCTAGCCAGGAAGATATCGCTCTGTTG ATGGTCATGAGTTACGGGTTCACGGACGGACCCTACAACGGGAGCTCGATCAGCATCATGGGTAAGAACCCGGCCATGAACCCGACGAGGGAGCTCCCAG TTTTGGGCGGCACGGGCGTTTTTAGGATGGCACGTGGGTACGCGGCAATGAAAACGGTGTCGGTTAATGCTGGCGGGGATGCCGTTGTGTTTTATAACGT CACGGTGTACACTCCGGCTTCTAATTAA
AA sequence Show only first row Show all	>Lus10025064 pacid=23167749 polypeptide=Lus10025064 locus=Lus10025064.g ID=Lus10025064.BGIv1.0 annot-version=v1.0 MSALQAQTPPPLKWAQRLDSGTGPESVTNLQFYFHDILSGSNPTAKRVVQPIVGTTITTLFGAIVMADDPLTETSDPGSKLVGRAQGMYSSSSQEDIALL MVMSYGFTDGPYNGSSISIMGKNPAMNPTRELPVLGGTGVFRMARGYAAMKTVSVNAGGDAVVFYNVTVYTPASN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	0	1
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	2.2	0.9547
AT1G71740			unknown protein		Lus10042773 [exp]	2.4	0.9491
					Lus10025501 [exp]	3.5	0.9419
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	5.2	0.9439
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	7.1	0.9378
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	7.5	0.9346
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	8.8	0.9215
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	8.8	0.9368
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	9.5	0.9292
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	9.9	0.9225

Compare expression of checked genes

Lus10025064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.