Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 197 / 6e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 151 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 147 / 2e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 144 / 3e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 142 / 3e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 139 / 3e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 132 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT5G49040 125 / 1e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 123 / 5e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 117 / 2e-32 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034478 [exp] 393 / 3e-140 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 261 / 3e-89 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 256 / 3e-86 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 252 / 1e-85 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 247 / 7e-83 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 237 / 2e-78 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 234 / 1e-77 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 226 / 5e-75 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 213 / 4e-70 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 199 / 1e-64 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 161 / 7e-50 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 159 / 1e-48 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 153 / 7e-47 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 154 / 1e-46 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.006G195300 [exp] 152 / 3e-46 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 152 / 7e-46 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023600 [exp] 146 / 7e-44 AT5G49040 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 143 / 9e-43 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 142 / 3e-42 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10025065 pacid=23167796 polypeptide=Lus10025065 locus=Lus10025065.g ID=Lus10025065.BGIv1.0 annot-version=v1.0 ATGATGGGGTTATGTTTGGCTATTTTAGTAATTTCCTTGGTCGTGACCAAGCCATCGGCCCAATCGGTCAACTGGGCCAAGAGGGTCGACTCTGGCAACG GTCCAGATGTGATCACGAACATGCAGTTCTACTTCCACGACATAATAAGCGGGAGCAACCCAACCGCTGAGAAGGTGGTCGAACCGGTTTCCGGGTCATC CACCAATTTCGGCCAAATCAACATAGCCGACGACGCACTGACCGAGACCTCTGACCCCAAGTCCAAGCTCGTAGGCAGGGCTCAGGGGCTCTACGGTTCT GCAAGCGAGAACGACATGGCTCTGCTAATGGTCATGAGCTATGGATTCACCGATGGACCCTATAAAGGTAGCTCACTCAGCATCATGGGCAAGAACCCAG CCATGAACCCGACCCGGGAGCTACCCGTTCTGGGTGGCACAGGCCTGTTCAGGATGGCGCGTGGGTACGCCCTCATGAAGACGGTGTCGTTTAATTCGGC AGGAGACGCTGTTGTGCATTATAATGTGACGGTGCATGCTCCGGCGGACAACGAAGCCGCGCCGGCTTCTACTTCTTCCGTGAGTCGCAGTGGTGGTGCC ACTGGCTCGCCGAAATCTTCGTCGGCGTCGTCTTCTGCTTCAACCCCGGTGATTTTGCGTGGGACGCAATGGGTCGTTAGTGCTTTGATGGCTTTCATTT GTTTATCGTCATATAAATAG
AA sequence Show only first row Show all	>Lus10025065 pacid=23167796 polypeptide=Lus10025065 locus=Lus10025065.g ID=Lus10025065.BGIv1.0 annot-version=v1.0 MMGLCLAILVISLVVTKPSAQSVNWAKRVDSGNGPDVITNMQFYFHDIISGSNPTAEKVVEPVSGSSTNFGQINIADDALTETSDPKSKLVGRAQGLYGS ASENDMALLMVMSYGFTDGPYKGSSLSIMGKNPAMNPTRELPVLGGTGLFRMARGYALMKTVSFNSAGDAVVHYNVTVHAPADNEAAPASTSSVSRSGGA TGSPKSSSASSSASTPVILRGTQWVVSALMAFICLSSYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	0	1
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	1.0	0.9683
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	2.0	0.9657
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	3.5	0.9448
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	3.5	0.9496
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	3.9	0.9424
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	4.7	0.9222
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10025281 [exp]	4.9	0.9396
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	7.1	0.9237
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	7.5	0.9113
AT2G48140		EDA4	embryo sac development arrest ...		Lus10006906 [exp]	7.5	0.9160

Compare expression of checked genes

Lus10025065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.