Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 484 / 3e-168 Amidase family protein (.1) AT5G07360 124 / 8e-30 Amidase family protein (.1.2) AT3G25660 110 / 2e-25 Amidase family protein (.1) AT5G64440 72 / 4e-13 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 65 / 4e-11 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G09420 50 / 3e-06 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027852 [exp] 549 / 0 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10002805 [exp] 540 / 0 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10027853 [exp] 531 / 0 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10034477 [exp] 246 / 7e-77 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10032519 [exp] 124 / 4e-30 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 120 / 1e-28 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10027854 [exp] 98 / 1e-24 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10007361 [exp] 104 / 1e-23 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 102 / 8e-23 AT3G25660 780 / 0.0 Amidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G171000 [exp] 633 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 630 / 0 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.009G130700 [exp] 614 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G169300 [exp] 569 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130500 [exp] 546 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.009G130400 [exp] 536 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.004G169400 [exp] 518 / 0 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.015G109400 [exp] 125 / 2e-30 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.018G086350 [exp] 102 / 4e-23 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.005G070300 [exp] 98 / 3e-21 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10025066 pacid=23167773 polypeptide=Lus10025066 locus=Lus10025066.g ID=Lus10025066.BGIv1.0 annot-version=v1.0 ATGGCTGCCACTCCACTATTCTTCCTACTTCTACTCTTCACTCTCCCATCTAAATTCCACTCCAAACCCACCACCAACAAAAACAATACCACCACATTAC CCCAACTAATTACGGAAGCCACCATAGACACCATCCAGCTAGCTTTCGCCAACAACACCCTCACTTCCAAACAACTCGTCCAGTTCTACCTCGGCCGGAT CGAGAAACACAACGGCCTCCTCAAAGCAGTCATCGAGGTCAACCCATACGCTCTCCGTCTGGCCAAAAGGGCAGACAGAGAGCGTCGGGGTAAGCTCCCT GGCTCGGGTGTTGGGCTACACGGAATCCCCGTCTTGCTCAAGGACAACATTGCCACCAAAGACAAGCTCAACACCACGGCCGGGTCCTTTGCACTTTTCG GTTCGATCGTCCCTAGGGACGCGGGCGTGGCTAAGAAGATAAGGGCTGCCGGGGCGATCATTTTGGGGAAGGCTAGTTTGAGCGAGTGGTCCAATTTCAG GTCGAGCTATGCGCCAAATGGGTTTTGCGGCAGAAGTGGCATTGGGAAGAATCCTTATGTTTTATCAGCGGATCCTTGCGGATCGAGTAGCGGGCCAGCT ATATCGATGGCGGCTAATTTCGCTATGGTTTCGTTGGGTTCTGAGACTGACGGATCGATATTATGTCCTTCTAGTTTGAATTCGGTAGTTGGAATCAAAC CTACCGTTGGGTTAACTAGTAGGGCAGGGGTCATCCCAATTTCCCCTAGACAGGACACAATCGGGCCAATCTGCAGGACAGTGGCCGACGCTACTTACGT ACTCGACGCAATAGTAGGATTCGATCAGAACGATCCTGCAACAACAACGGCCGCGAAGTACATTCCTCGCGGAGGATACAAACAGTTCCTCAAGCGAGAC GGGCTCAAGGGGAAAAGGTTGGGGATAGTGAGGGATCCCTTCTTCCAATTCGGGGACGAAGATTCTGCTCTGGCCACTGCATTTCGTAAACATCTCCGAA CACTAACCAAGGAAGGTGCGGTTCTAGTTGACCCAGTCGAGATAAGTAACGTGACAGATGTCTTGGGTGGCAACTCCGGAGAGATGGATGCACTTTTAGC TGAGTTCAAACCGGCGCTGAATTCGTACCTAAAAGGATTGGTTTCGTCCAAGGTTCGATCTTTGCGAGATGTCATCGCCTTCAACAACAAGTTCGCCAAA CTAGAGAAGACCAAGGAGTATGGGCAGGATATAATGGAGACATCAGAAGGGTTGAATGGGACTAAGGGTGAGTTGAGAGCAGGGTTGTCAAAGTTGAAAC AATTGTCTGAGATGGGGATTGAGAAGGTCATGAAAGAGCAGAAATTGGATGCATTGGTGGCTGGTAGGGTGGATTTATGTGCAGTTCTGGCAATTGGAGG GTATCCAGGGATTACTGTGCCTGCTGGGTATGATGGTAAAGGAGTCCCCTTTGGGATTTTCTTTGGTGGGTTGAAGGGTTCAGAGCCCAAGTTGATCGAG ATTGGGTTTGGGTTTGAACAAGCGACTAAGATTAGGAAGCCACCTTCTTTTCGGCATTAA
AA sequence Show only first row Show all	>Lus10025066 pacid=23167773 polypeptide=Lus10025066 locus=Lus10025066.g ID=Lus10025066.BGIv1.0 annot-version=v1.0 MAATPLFFLLLLFTLPSKFHSKPTTNKNNTTTLPQLITEATIDTIQLAFANNTLTSKQLVQFYLGRIEKHNGLLKAVIEVNPYALRLAKRADRERRGKLP GSGVGLHGIPVLLKDNIATKDKLNTTAGSFALFGSIVPRDAGVAKKIRAAGAIILGKASLSEWSNFRSSYAPNGFCGRSGIGKNPYVLSADPCGSSSGPA ISMAANFAMVSLGSETDGSILCPSSLNSVVGIKPTVGLTSRAGVIPISPRQDTIGPICRTVADATYVLDAIVGFDQNDPATTTAAKYIPRGGYKQFLKRD GLKGKRLGIVRDPFFQFGDEDSALATAFRKHLRTLTKEGAVLVDPVEISNVTDVLGGNSGEMDALLAEFKPALNSYLKGLVSSKVRSLRDVIAFNNKFAK LEKTKEYGQDIMETSEGLNGTKGELRAGLSKLKQLSEMGIEKVMKEQKLDALVAGRVDLCAVLAIGGYPGITVPAGYDGKGVPFGIFFGGLKGSEPKLIE IGFGFEQATKIRKPPSFRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34880			Amidase family protein (.1)		Lus10025066 [exp]	0	1
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10035719 [exp]	2.4	0.7174
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10042288 [exp]	2.6	0.8198
AT3G01750			Ankyrin repeat family protein ...		Lus10041582 [exp]	7.2	0.7185
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10006613 [exp]	21.8	0.7443
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10029351 [exp]	22.4	0.7521
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	22.7	0.7057
AT4G21500			unknown protein		Lus10018431 [exp]	32.9	0.6995
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	37.1	0.7134
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10026352 [exp]	58.5	0.6454
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	59.5	0.6501

Compare expression of checked genes

Lus10025066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.