Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 213 / 1e-70 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 150 / 3e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 149 / 1e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 147 / 6e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 140 / 3e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 134 / 8e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 129 / 8e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 123 / 2e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 123 / 2e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT4G38700 123 / 2e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034476 [exp] 333 / 6e-118 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 217 / 2e-72 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 215 / 1e-71 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 217 / 2e-71 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 213 / 3e-70 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 205 / 1e-66 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 203 / 3e-66 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 203 / 7e-66 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 200 / 8e-65 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 211 / 3e-70 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 173 / 6e-55 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 166 / 4e-52 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 163 / 3e-51 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 160 / 4e-50 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 156 / 2e-48 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 154 / 1e-47 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 152 / 1e-46 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 149 / 1e-45 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G023600 [exp] 147 / 6e-45 AT5G49040 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10025067 pacid=23167746 polypeptide=Lus10025067 locus=Lus10025067.g ID=Lus10025067.BGIv1.0 annot-version=v1.0 ATGTCGCTACTCTTCGTCGTAACGCTCCTCCTCCTCTTCGTGGCGGTTTCCGGCCACAACAAACAATTTCCATCAACGTCGTCTTCGGTCAAGTGGGCGA CGAGGAAGGAGTCTTGCGATCCGGGCAAGGAGACGGTAACCAACCTCCAATTCTACTTCCATGACGTCGTCAAGGGGAATAACCCGACCGCAGTGAGGGT GGCTCAGGCGGCTGGAACGGACAAGTCGCCGACGCTATTCGGGGAGATTTTGATGGCGGATGACCCGCTTACGGAGACAGCTGACCCGACGTCCAAGCTG ATTGGGCGGGCCCAGGGGCTTTATGGGTCTGCGTCGCAGAATGATGTAGGCTTGATTATGGCGCTGGGCTTCAGCTTTGTCGATGGGCCTTATAATGGGA GTACGATAAGCGTGGTGGGGAAAAATCCGGCGACGAATCCGAACAGGGAGCTGCCGGTGGTCGGCGGCACGGGGGTTTTCAGGATGGCACGTGGGTACGC ACTGCTTAAAACGGATCCGCTTACTCAGGTCGGGAATGCGGTGGTTCACTACGATGTTACCGTGCACACGCCCCCAGCTGACTGTCACTGA
AA sequence Show only first row Show all	>Lus10025067 pacid=23167746 polypeptide=Lus10025067 locus=Lus10025067.g ID=Lus10025067.BGIv1.0 annot-version=v1.0 MSLLFVVTLLLLFVAVSGHNKQFPSTSSSVKWATRKESCDPGKETVTNLQFYFHDVVKGNNPTAVRVAQAAGTDKSPTLFGEILMADDPLTETADPTSKL IGRAQGLYGSASQNDVGLIMALGFSFVDGPYNGSTISVVGKNPATNPNRELPVVGGTGVFRMARGYALLKTDPLTQVGNAVVHYDVTVHTPPADCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10025067 [exp]	0	1
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	17.9	0.6106
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	19.4	0.6105
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021387 [exp]	28.8	0.5730
AT5G59100			Subtilisin-like serine endopep...		Lus10040751 [exp]	46.5	0.5737
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010467 [exp]	47.2	0.5111
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	65.2	0.5500
AT4G05220			Late embryogenesis abundant (L...		Lus10007636 [exp]	68.2	0.5303
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	70.0	0.5219
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10029877 [exp]	82.6	0.5207
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	84.1	0.5252

Compare expression of checked genes

Lus10025067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.