Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05320 351 / 1e-118 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G38540 341 / 9e-115 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 215 / 3e-65 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT4G15760 200 / 6e-60 MO1 monooxygenase 1 (.1.2) AT2G29720 191 / 3e-56 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 112 / 2e-28 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 50 / 2e-06 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034475 [exp] 717 / 0 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 395 / 5e-136 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 379 / 1e-129 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 350 / 2e-118 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016398 [exp] 346 / 9e-115 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 251 / 7e-80 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 249 / 6e-79 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 240 / 6e-75 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 239 / 1e-74 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176950 [exp] 405 / 8e-140 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 399 / 2e-137 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 249 / 6e-79 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 242 / 5e-76 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 231 / 1e-71 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 228 / 1e-70 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 224 / 4e-69 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 223 / 7e-69 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 222 / 4e-68 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 214 / 1e-65 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10025068 pacid=23167799 polypeptide=Lus10025068 locus=Lus10025068.g ID=Lus10025068.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAATAGTGGTTGTGGGGGCGGGAATTTCTGGTCTTGCAACAGCTTTAGCACTCCACAGGATGGGGATAAGGAGCTTAGTATTGGAATCAT CTGAGTCTTTGAGAGCCAGTGGATTTGGTTTCATGGCATGGCCTAATGCTTGGAAGGCCTTGGATGCTCTTGGGATTGGCGATACTCTCCGCAACCAGCA CATCAGGCTCCAAGGGATTGTGGCTGGATCAAATGTGACAGGGTGTCTGGTCTCTGAGAAGTCATACAAGAACAAGGAAAGACCAAATGGATATGATGAA GTTAGATGCATGAAGAGGAAAGAGCTTATGGAGGCACTTTCAGGAGAGCTTCCAGATGGCACTATCAGATTCTCATCCAAGTTGGTTTCCATCCAAGAAT CAGATCACCATCATCATCTCAAGCTTCTTCATCTTGCTGATGGAACCATAATCAAAGCCAAGGTGTTGATTGGTTGTGATGGAGTGAACTCAGTGGTGGC AAAGTGGCTAGGGTTTGGCAAGCCAGCCTTTGCTAGCAGATCTTCCATTCGAGGCTATGCACACTTCGAATCCGGCCATGGCTTCGTGCACAAAGGGTTC CAGTTCCATGGGAATGGCATCAGAGTTGGTTACAACCCTTGTGATGCCAACACTGCCTACTGGTTCTTCACTTGGACTCCCTCTAGTCAAGACAAGGATA TAGGGAACGACCCAGAAGAGGCAAAGAAGTTTGTACTGAGCACAATTGGGAATGTCCCGAGCGAGATGATAGATGTCATATCGAAAACGGGGACGAGAAC ATATGTGTCACCATTGAGGTTCAGGTATCCATGGGAGCTAGTTTGGGGGAACATAAGCAAGGAGAATGTGTGCATAGCAGGGGATGCATTGCATCCAATG ACTTCAGATGTTGGACAAGGTGCTAACATGGCTTTGGAAGATGGTGTTATTCTCGGTAGATGCCTTGCTGAGGCTCTGAAGAAGAAGAAGAAGAAGAAGA AGAAGAAACAAGAAGAAGATGAAGATGGTGAATTTGAGAGGGTAAAGTTGGGTTTGGGGAAGTTTGGGGAAGAGAGGAGATGGAGAAGTTTTGGTGTGAT AAGTGCAGCTTATGTGATTGGATACATTCAGCAGAGTAATTGGTGGGTTATGAAGTTTGTTAAGGATAAACTTCTTTCCCCTTTCTTGGGGAAGCTCCTT CTCAAGAATGCTGATTTTGATTGTGGAGAACTCAAGCTTTGTTGA
AA sequence Show only first row Show all	>Lus10025068 pacid=23167799 polypeptide=Lus10025068 locus=Lus10025068.g ID=Lus10025068.BGIv1.0 annot-version=v1.0 MEEEIVVVGAGISGLATALALHRMGIRSLVLESSESLRASGFGFMAWPNAWKALDALGIGDTLRNQHIRLQGIVAGSNVTGCLVSEKSYKNKERPNGYDE VRCMKRKELMEALSGELPDGTIRFSSKLVSIQESDHHHHLKLLHLADGTIIKAKVLIGCDGVNSVVAKWLGFGKPAFASRSSIRGYAHFESGHGFVHKGF QFHGNGIRVGYNPCDANTAYWFFTWTPSSQDKDIGNDPEEAKKFVLSTIGNVPSEMIDVISKTGTRTYVSPLRFRYPWELVWGNISKENVCIAGDALHPM TSDVGQGANMALEDGVILGRCLAEALKKKKKKKKKKQEEDEDGEFERVKLGLGKFGEERRWRSFGVISAAYVIGYIQQSNWWVMKFVKDKLLSPFLGKLL LKNADFDCGELKLC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	0	1
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	1.0	0.9724
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	1.4	0.9629
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	1.7	0.9626
AT3G05390			unknown protein		Lus10004494 [exp]	2.6	0.9542
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	2.8	0.9608
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	3.2	0.9469
					Lus10002087 [exp]	3.2	0.9599
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	3.5	0.9563
					Lus10010684 [exp]	4.5	0.9281
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	5.7	0.9494

Compare expression of checked genes

Lus10025068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.