Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20940 133 / 7e-40 Protein of unknown function (DUF1279) (.1) AT2G27290 42 / 0.0001 Protein of unknown function (DUF1279) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034474 [exp] 270 / 9e-94 AT2G20940 134 / 1e-41 Protein of unknown function (DUF1279) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136100 [exp] 164 / 5e-52 AT2G20940 155 / 2e-49 Protein of unknown function (DUF1279) (.1) Potri.009G161800 [exp] 40 / 0.0004 AT2G27290 153 / 6e-47 Protein of unknown function (DUF1279) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06916 [flax] [poplar] DUF1279 Protein of unknown function (DUF1279)
Representative CDS sequence Show only first row Show all	>Lus10025069 pacid=23167879 polypeptide=Lus10025069 locus=Lus10025069.g ID=Lus10025069.BGIv1.0 annot-version=v1.0 ATGGCGGGCGGTCGATTCAGGGAGCTACTGAAGAAGTACGGAAAAGTAGCGTTGGGGGTTCACTTCTCCGTCTCCGCCGCTTCGATCTCTGGCCTCTATG TCGCCATAAGGAACAATGTCGACGTGGAATCGGTTTTTGACAAGCTGCACCTCCCCGGCCTGTCTTCCAACAAAGATGGAGAGTCGTCCACCGTCGCTGA TCCGAACCAGAAAGCTCCTCCGGTGGAAGGAGCCTCGATTGAAGAGACGACGAAGAGCGGCAGGGATCGGGTGGCGGAGCTAGCTGCTTCGAGCGGCGGC GCGTTTGCTGTGGCTCTGCTGTTCAACAAGGCTCTGTTCCCGATTAGGGTGCCGATCACGATCGCGCTCACACCTGCGGTGGCGAAGGCTTTGGCCAGGA GAGGACTGATTCGAAGTCCAGGCATTGATGATGATGGATGGAAATTAGATTCTGACCGAGTCTTGCAACGGTTAATGGTTCAAAGTTTCTTGGAAGCATC GCGATCAGCGATGCGAAAGATTTTTGTGGTTTCTGCAACTGCTGGTTTGCTGGTGGCAGTTTTAACTACTGCATATACGATTCTGCAGAATTTTTTTGCA GCTGGCTTATTCGCCGCAGCAAAATGTTGCGAGTAG
AA sequence Show only first row Show all	>Lus10025069 pacid=23167879 polypeptide=Lus10025069 locus=Lus10025069.g ID=Lus10025069.BGIv1.0 annot-version=v1.0 MAGGRFRELLKKYGKVALGVHFSVSAASISGLYVAIRNNVDVESVFDKLHLPGLSSNKDGESSTVADPNQKAPPVEGASIEETTKSGRDRVAELAASSGG AFAVALLFNKALFPIRVPITIALTPAVAKALARRGLIRSPGIDDDGWKLDSDRVLQRLMVQSFLEASRSAMRKIFVVSATAGLLVAVLTTAYTILQNFFA AGLFAAAKCCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20940			Protein of unknown function (D...		Lus10025069 [exp]	0	1
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	2.0	0.9314
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	2.0	0.9024
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	2.8	0.8943
AT4G37830			cytochrome c oxidase-related (...		Lus10011574 [exp]	3.5	0.8888
AT5G09570			Cox19-like CHCH family protein...		Lus10007086 [exp]	3.7	0.8854
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	6.9	0.8819
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	8.7	0.8926
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	11.6	0.8977
					Lus10032951 [exp]	12.2	0.8412
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	13.9	0.8715

Compare expression of checked genes

Lus10025069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.