Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16920 1104 / 0 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT2G33770 417 / 1e-130 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT1G53025 257 / 6e-75 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 253 / 1e-72 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 230 / 5e-68 Ubiquitin-conjugating enzyme family protein (.1) AT5G05080 56 / 4e-08 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT2G02760 53 / 7e-08 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 53 / 8e-08 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT1G78870 50 / 2e-07 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT5G41700 49 / 2e-06 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034472 [exp] 1478 / 0 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10005854 [exp] 370 / 2e-113 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10001214 [exp] 355 / 1e-110 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10039831 [exp] 254 / 6e-75 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10028151 [exp] 253 / 1e-73 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10018596 [exp] 245 / 1e-71 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10037778 [exp] 233 / 2e-68 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10034471 [exp] 224 / 4e-68 AT2G16920 195 / 1e-58 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10042852 [exp] 222 / 5e-63 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136000 [exp] 1207 / 0 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G176000 [exp] 1187 / 0 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.011G052600 [exp] 428 / 2e-134 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 410 / 1e-127 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.001G400300 [exp] 266 / 6e-77 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 260 / 3e-76 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 262 / 1e-75 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.010G146500 [exp] 236 / 2e-69 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 233 / 3e-68 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G108500 [exp] 124 / 1e-30 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10025070 pacid=23167765 polypeptide=Lus10025070 locus=Lus10025070.g ID=Lus10025070.BGIv1.0 annot-version=v1.0 ATGGATGAAACAGAACAAATACAGGGAATTAATGACGTAAAAGTTGTAGATCGTGGTTTCTTACATGGAGATTATGTTGCTTCCGCTTCTGACCCGACCG GACAAGTAGGAGTTGTGGTGGATGTCAGTATCTCTGTTGATTTGCTAGCTCCTGATGGCTCTGTAGTTAAGGATGTATCATCTAAAGACTTGAAGCGTGT GAGGGAGTTTGTTGTTGGTGATCATGTCCTACTTGGTCCTTGGCTTGGTAGAGTTGATGACGTCATGGATAATGTGACCGTTTTAGTAGATGATGGTTCA ATCTGCAAAGTACTAGGTGCTGAACCACTACGTCTTAAACCAATCTCCAAAAGTTTCTTCGAGGAGGGAGATCATTTCCCTTACTATCCTGGGCAGCGTG TGAGGGCAAGCTCATCTTCAGTTTTTAAGAATTCCCGATGGTTATCTGGCCTGTTTAAGCCTAATAGATTAGAAGGAACTGTTACCAAAGTTTCCGCAGG ATCAGTATTCATCTATTGGATAGCATCTGCTGGATATGGTCCAGATTCTTCAATGGCTCCTGCTGAAGAGCAGAACCCTAAAAATTTGAAACTGCTATCT TCCTTTGCACATGCCAATTGGCAAGTAGGAGACTGGTGTCAAGTTCCTCCAACCGTTCTAAAATCATCTTCCATCAGTCTAGACATTGAATTATCCACTT TAGGACTATGTGATCCAATGAAAGATACTCTGGTTTCTAGGCAGGTGGGAAATGATTGCGATCCCGATGAGGTTGGACTAGAGGAATTGGATGAGAATAA AGAATCCACAAGCATTGATCCCAAGGTAGTTCCTATTGCAAATAAAGTTAAAATTAGAGGTAAAGACTATCACGAATCAAACTCATGCAGCAGTTCTACA TCTGCTTCAAAGGAGCCAGCACATGAAACTTGGCCTCTTCACCGGAAAAAGATTCGTAAAGTTGTAATTAGGAAGGAAAAGAAGGCTCGGAAAAAGGAGG AAAACTTTGAAGGGGCACTTCTTATTTACAATACAAGGACGGCTGTTGATGTGGCTTGGCAGGATGGAACTGTAGAACGTGGACTGGAGTCAACAAAGTT AATTCCAATTGATAGTCCTGGTGATCATGAATTTGTCGCCGAACAGTATGTGGTGGAAAAGGCATCTGATGATATTGATAATTCTTCTGAAGTAAGGCGA GTTGGAGTCGTGAAAAGTGTCAATGCAAAGGAACGAACAGCTTGTGTGAGGTGGTTAAAGCCAGTTGTGAGGGCTGAAGATCCTCGTGAATTTGACAGGG AGGAGATCGTAAGTGTTTATGAGCTCGAGGGGCATGCTGATTATGACTACTCTTACGGAGATGTGGTTGTCAGGCTGTCCCCAGTTTCAGTTTTTGCTCA AACAATCCCTGATCAGGAGTACCTTCAGGAGCCAAAGCAGCCAAATTTGATGGATGATCCCGAGGCTACTGAAAATGTCCCACTGTGCAAGAATTCAGAG GATGCACTTTGGGAAGAACCCAGTATCTACGGCTCAGATCTCTCTTGGGTTGGGAATATAACTGGCCTTATCAACGGGGATATTGAAGTGACATGGGCTG ACGGAATGGTCTCTACGGTTGGACCTCAAGCAATTTTTGTAGTTGGCCGCGATGAAGACGATGAGTCCATTGCTGTTGGTAGTGAATTAAGTGATGATGC TGCTAGTTGGGAAACTGTTAATGATGATGATGATGATGATGATGACATGGATGCTCATGAAAAATTTCAAGAGAATCTACAGTTGCAAAATGCCACTGAC TTGAACTCTGAGGCGGAGGGTAGCATAGAGAACAGTAATGGCAGCAGAAGTCCAGCAGTTTCATTATCCTTGGCTGCTTTTGGCTTTGTTACAAGATTGG CCACTGGAATATTTTCGCGTGGGCGAAAACACTCAGATGCAGATCTATCGGACAATGGAAGCGAATCTGAATCTCAGAGACTTGTATCTGCCACTGAAGA AAGAGATCATATTGACTTTTCGGGCTCTCAGAAGTCGCATGTTTTCGATCCTGAAAGTCTTATTGAGGAGGAAGAAAATGGGGCTCTAGAAGTTGCTGCA TCATCAGGTGATGCACAACCTTCTGACGAATTGAAAATCAATAACTCAAATACAGCATTTCATGTCCAGGGTGATACAAACTCATTCAAACGGTTTGATT CAACAAAAGAGCCCTTGGACCACTATTATGTGGGTTCGGTTGGACAGATTAGCAACAACCGGAAGTGGTTAAGGAAGGTACAACAAGATTGGAACATTCT TCAGAATAACCTGCCTGATGGTATCTATGTAAGAGTTTACGAAGATCGAATGGATCTTTTGAGGGCGGTGATAGTTGGTGCATACGGAACCCCTTACCAA GATGGGTTGTTCTTCTTCGATTTCTACCTTCCGCCAGAGTATCCAGATGTTCCACCGTCAGCATACTATCATTCTGGCGGTTGGCGTATAAATCCGAATC TTTACGAGGAGGGCAAGGTTTGCCTTAGTCTTTTGAACACTTGGACAGGCAGAGGGAACGAAGTTTGGGATCCGACATCTTCTAGCATCCTGCAAGTCCT AGTTTCGCTTCAAGGGCTGGTACTGAATTCGAGACCTTATTTCAACGAAGCTGGATATGACAAACAAGTCGGGACTGCTGAAGGCGAAAAGAACTCACTT TCCTACAATGAGAACACGTTCTTGCTAAACTGTAAGACCATGATGTATCTCATTCGAAGGCCTCCAAAGGATTTCGAGGAACTTATTAAAGAGCATTTCA AGAAGCGAGGTGCCTACATTCTCAAGGCCTGTGATGCATACATGAAAGGAAATTTAATCGGCTCTCTGAAGATTGATGCATCGGGAACCGAGGATGCTAG CTCGAATTTAACCTCGGTTGGTTTCAAGCTGATGCTGGCCAAGACCGTGCCTAAACTATACGCATCGCTGAACGAAATCGGAGCTGATTGTCAAGAGTAT AACCATCTGCTGCAGCAGTTGTAG
AA sequence Show only first row Show all	>Lus10025070 pacid=23167765 polypeptide=Lus10025070 locus=Lus10025070.g ID=Lus10025070.BGIv1.0 annot-version=v1.0 MDETEQIQGINDVKVVDRGFLHGDYVASASDPTGQVGVVVDVSISVDLLAPDGSVVKDVSSKDLKRVREFVVGDHVLLGPWLGRVDDVMDNVTVLVDDGS ICKVLGAEPLRLKPISKSFFEEGDHFPYYPGQRVRASSSSVFKNSRWLSGLFKPNRLEGTVTKVSAGSVFIYWIASAGYGPDSSMAPAEEQNPKNLKLLS SFAHANWQVGDWCQVPPTVLKSSSISLDIELSTLGLCDPMKDTLVSRQVGNDCDPDEVGLEELDENKESTSIDPKVVPIANKVKIRGKDYHESNSCSSST SASKEPAHETWPLHRKKIRKVVIRKEKKARKKEENFEGALLIYNTRTAVDVAWQDGTVERGLESTKLIPIDSPGDHEFVAEQYVVEKASDDIDNSSEVRR VGVVKSVNAKERTACVRWLKPVVRAEDPREFDREEIVSVYELEGHADYDYSYGDVVVRLSPVSVFAQTIPDQEYLQEPKQPNLMDDPEATENVPLCKNSE DALWEEPSIYGSDLSWVGNITGLINGDIEVTWADGMVSTVGPQAIFVVGRDEDDESIAVGSELSDDAASWETVNDDDDDDDDMDAHEKFQENLQLQNATD LNSEAEGSIENSNGSRSPAVSLSLAAFGFVTRLATGIFSRGRKHSDADLSDNGSESESQRLVSATEERDHIDFSGSQKSHVFDPESLIEEEENGALEVAA SSGDAQPSDELKINNSNTAFHVQGDTNSFKRFDSTKEPLDHYYVGSVGQISNNRKWLRKVQQDWNILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQ DGLFFFDFYLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPTSSSILQVLVSLQGLVLNSRPYFNEAGYDKQVGTAEGEKNSL SYNENTFLLNCKTMMYLIRRPPKDFEELIKEHFKKRGAYILKACDAYMKGNLIGSLKIDASGTEDASSNLTSVGFKLMLAKTVPKLYASLNEIGADCQEY NHLLQQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	2.0	0.8474
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	3.5	0.8592
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	5.4	0.8620
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	6.2	0.8574
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	7.3	0.8468
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	7.4	0.8473
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	7.9	0.8443
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	8.4	0.8263
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	9.6	0.8178
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	9.9	0.7641

Compare expression of checked genes

Lus10025070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.