Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10170 1359 / 0 ATNFXL1 NF-X-like 1 (.1) AT5G05660 277 / 1e-78 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034470 [exp] 2023 / 0 AT1G10170 1345 / 0.0 NF-X-like 1 (.1) Lus10028286 [exp] 242 / 2e-66 AT5G05660 1131 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Lus10040200 [exp] 194 / 1e-50 AT5G05660 1064 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043700 [exp] 1521 / 0 AT1G10170 1378 / 0.0 NF-X-like 1 (.1) Potri.015G034500 [exp] 1498 / 0 AT1G10170 1363 / 0.0 NF-X-like 1 (.1) Potri.010G188700 [exp] 279 / 2e-79 AT5G05660 1038 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Potri.008G068500 [exp] 63 / 3e-10 AT5G05660 171 / 2e-48 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01422 [flax] [poplar] zf-NF-X1 NF-X1 type zinc finger
Representative CDS sequence Show only first row Show all	>Lus10025071 pacid=23167869 polypeptide=Lus10025071 locus=Lus10025071.g ID=Lus10025071.BGIv1.0 annot-version=v1.0 ATGAGCTCTCAACCTAGAGGCGATCGAAGGGACAGGTCTAGATCATCTTCTCAAACTGCACAGCAGCGTTGGATTCCCCGAGGATCTGCCCCCTCATCAG TTTCTGTCAACAATAACATACCTCCTGCAACTTTCAATCCAAGTAACGTTGATGGAAGAGGTGAGCAGTCGAATGCTAATCCCAATTCCGGACCCCGTGA GGCTAGACCTAAAGGAGCCGGCAATGCTTCTCGTAGTTATGTGGCGGGTCGTCCGGTGAATAATCACAGGAGGGACAAGCAAAGGGAGAAGGGTGAAACA CATGCTGTGAAGGAGTCGGTTGATCCGAACCTGCCTCAACTTGTTCAAGAGATTCGGGAGAAGCTTGCAAAGGGAACTGTCGAGTGCATGATCTGTTATG ATATGGTGCGAAGGTCTGCTCCTATTTGGTCTTGCTCGAGCTGCTACTCCATTTTTCATCTGCATTGTATCAAGAAATGGGTGAGAGCTCCTACATCGAT CGACATGTCAGCAGATAAGCATCAGGGATTTAATTGGCGCTGCCCAGGCTGCCAATATGTTCAGCTCACGCCATTGAAGGAGATCAGCTATCTCTGCTTT TGTGGGAAAAGAACTGATCCACCTTCTGATTTGTATTTGACTCCTCATTCATGTGGAGAGCCATGTGGGAAGCCGCTCGAGAGGCATTTACCAGGTAGCT TGGAGACTAAGGAGGACTCTTGCCCTCATAACTGTGTGTTGCAGTGCCACCCCGGGCCCTGCCCACCATGTAAATCATTTGCTCCACCATGCTTGTGTCC TTGCGGGAAGAAAACTATTACCACTAGGTGTTCTGATCGCCAGTCTGTTCTCACGTGTGGTCAACAATGTGATAAGCTTCTTGATTGTCAGCGTCATCGC TGTGGGAGGATGTGCCATGTCGGACCTTGCGATCCTTGTGAAATCCTTGTCACAGCCTCGTGCTTTTGCAAGAAAAAGCAGGAGGTTGTTTATTGCGGAG ACATGTCTGTGAAGGGAGAAGTGAACGTTAAAGACGGGGTGTTTTCCTGCAATTCCAGTTGTGGAAAGCTGCTTGCTTGTGGAAATCATGAATGCGATGA AGTGTGTCATCCAGGTCCTTGTGGCAGTTGTGCTTTGATGCCAGGAAGAGTCAAGTCTTGTTATTGTGGAAAGACGAGCTTGCAGAAGGAAAGGAAGTCT TGTTTGGATCCTATTCCTAACTGTTCACAGGTTTGCAGCAAACTTCTTCCCTGTGGAATTCACAACTGTGAAGACTTGTGCCATTCTGGTGATTGCCCGC CTTGTATGGTCAGTGTCTCGCAGAAATGTCAATGTGGATCAACCTCCCGAACTGTGGCATGTTACCAAACAAGTACTGAAAGTGAAAAATTCAAGTGTGA CAAGCCCTGTGGTCGCAAGAAGAACTGTGGAAGGCATCGGTGCAGTGAACGTTGCTGCCCTCTTTCAAATCCGAATCCTGTTCGGTCTGAGGATTGGGAT CCACACTTCTGCCAAATGGCGTGTGGGAAGAAGTTGAGGTGTGGTCAACATTCTTGTGAATCTCTGTGTCACAGTGGTCACTGTCCTCCCTGTCTCGAGA CAATATTCAGTGATTTAACTTGTGCCTGTGGAAGGACTTCAATCCCTCCGCCATTGCCGTGTGGTACACCGGCACCTTCATGTCAGCTCCCATGTTCAGT TCCTCAACCTTGTGGGCATTTGGCTTCTCATAGCTGCCACTACGGTGACTGCCCTCCTTGTTCAGTCCCTGTTGCAAAGGAATGTGTTGGTGGGCATGTG GTTCTTAAAAACATACCATGCGGGTCAAAAGACATAAGGTGTAATAAGCTCTGTGGTAAAACTAGGCAGTGTGGTCTACATGCATGTGGGCGAACTTGTC ATCCAGCACCATGCGACTCTTCTGGTTCAACTAGTGCAGGGGCGGCGAGAGTTTCTTGTGGCCAGACATGTGGGGCGCCCAGAAGAGACTGCAGGCATAC TTGTGCAGCACTTTGCCATCCTTCTTCTCCTTGCCCAGACGTGAGATGCCAGTTCCCTGTGACGATTAGTTGCTCATGCGGCAGGATAACAGCTAGCGTG CCATGCGATGCCGGAGGGACCAATGCTGGTTATAGTGCCGATACGGTTTTTGATGCTTCCATAGCACATAAGTTGCCAGCACCGCTTCAACCAGTGGAAT CAACTGGTTCGAGGATCCCACTTGGCCAACGGAAGCTCACCTGTGATGAGGAATGTGCTAAGTCGGAGCGTAAGAGGGTTCTCGCTGATGCTTTTGACAT TAGTACTCCGAATTTCGAAGCTCTTCATTTTGGCGAGAACTCGCAGGTGACGGAATTGATTGCTGATTTATATAGGCGTGACCCGAAATGGGTTCTTGCC GTGGAAGAGAGGTGCAAGTACCTTGTACTTGGGAAGAGCAAGGGAACTGTAGGTGGTCTAAAGGTTCACGTTTTTTGTCCAATGATGAAGGACAAGCGTG ATGCAGTTAGGCTGATTGCAGAGAGGTGGAAGCTATCGATAAACGTTGCTGGTTGGGAGCCGAAGCGGTTCGTTGTGCTACATGCAACTCCCAAGTCCAG ACCCCCATCTCGCGTAATTTGCGTCAAGGGAACTACTACGAATCCGCACTCACCGACTTTTGATCCCTTGGTTGACATGGATCCCAGACTTGTTGTTTCG TTTCTCGATTTGCCTAGGGAAGCAGATGTGAGCTCGTTGGTCCTTAGGTTTGGTGGAGAATGTGAGCTGATATGGTTGAATGACAAGAATGCGTTGGCTG TATTCAGTGACCCTGCTCGTGCAGCAACTGCTCTGAGGAGGTTGGATCATGCATCGGCATATTACGGAGTGGCTGTGGTTCTTCAGAACACTGGCCCGGG TGGTGCCTGGGGAGCAATGGGTACCCCTGCTAGAGAAGGCGGAGGAGTGTCTGCCACATTGAAGGGGGCCAGTGCATGGAAGAAGGCTGTTACTCAGGTC GACTCTTGGGGCGGAGAAGAACAACGACATGTAAGTTCCATGGATGCTCAAAGCACTCCCTGGAAACAAAAAGAAGCTGCCGTAAACGCTTCAGTCAATC GTTGGAGTGTTCTGGACTTGGAATCGTCGTCCAGTAACGGTGCTTCGTTGATCAGAAGTAACAATCAAGGTGGAAGCCATTCTGGTTCGGGGGCTGGTGC GAGTTTACTCCCTCGTGATGCCGTTGTCCCAGAGGGAGAGTCGTCAGAAGTGGTGGATGATTGGGAGAAAGCTTATGACATGGAGAATGATGTGCAGTAG
AA sequence Show only first row Show all	>Lus10025071 pacid=23167869 polypeptide=Lus10025071 locus=Lus10025071.g ID=Lus10025071.BGIv1.0 annot-version=v1.0 MSSQPRGDRRDRSRSSSQTAQQRWIPRGSAPSSVSVNNNIPPATFNPSNVDGRGEQSNANPNSGPREARPKGAGNASRSYVAGRPVNNHRRDKQREKGET HAVKESVDPNLPQLVQEIREKLAKGTVECMICYDMVRRSAPIWSCSSCYSIFHLHCIKKWVRAPTSIDMSADKHQGFNWRCPGCQYVQLTPLKEISYLCF CGKRTDPPSDLYLTPHSCGEPCGKPLERHLPGSLETKEDSCPHNCVLQCHPGPCPPCKSFAPPCLCPCGKKTITTRCSDRQSVLTCGQQCDKLLDCQRHR CGRMCHVGPCDPCEILVTASCFCKKKQEVVYCGDMSVKGEVNVKDGVFSCNSSCGKLLACGNHECDEVCHPGPCGSCALMPGRVKSCYCGKTSLQKERKS CLDPIPNCSQVCSKLLPCGIHNCEDLCHSGDCPPCMVSVSQKCQCGSTSRTVACYQTSTESEKFKCDKPCGRKKNCGRHRCSERCCPLSNPNPVRSEDWD PHFCQMACGKKLRCGQHSCESLCHSGHCPPCLETIFSDLTCACGRTSIPPPLPCGTPAPSCQLPCSVPQPCGHLASHSCHYGDCPPCSVPVAKECVGGHV VLKNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPAPCDSSGSTSAGAARVSCGQTCGAPRRDCRHTCAALCHPSSPCPDVRCQFPVTISCSCGRITASV PCDAGGTNAGYSADTVFDASIAHKLPAPLQPVESTGSRIPLGQRKLTCDEECAKSERKRVLADAFDISTPNFEALHFGENSQVTELIADLYRRDPKWVLA VEERCKYLVLGKSKGTVGGLKVHVFCPMMKDKRDAVRLIAERWKLSINVAGWEPKRFVVLHATPKSRPPSRVICVKGTTTNPHSPTFDPLVDMDPRLVVS FLDLPREADVSSLVLRFGGECELIWLNDKNALAVFSDPARAATALRRLDHASAYYGVAVVLQNTGPGGAWGAMGTPAREGGGVSATLKGASAWKKAVTQV DSWGGEEQRHVSSMDAQSTPWKQKEAAVNASVNRWSVLDLESSSSNGASLIRSNNQGGSHSGSGAGASLLPRDAVVPEGESSEVVDDWEKAYDMENDVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	0	1
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	1.0	0.8267
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	5.7	0.7139
AT1G26580			unknown protein		Lus10037097 [exp]	6.9	0.7341
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	10.6	0.7459
AT3G53970			proteasome inhibitor-related (...		Lus10032055 [exp]	10.8	0.6667
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	11.5	0.7095
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	13.6	0.7428
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	14.2	0.7657
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	15.6	0.7363
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	18.6	0.7563

Compare expression of checked genes

Lus10025071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.