Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20200 290 / 1e-93 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) AT1G75990 286 / 3e-92 PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034469 [exp] 384 / 3e-130 AT1G20200 798 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10005061 [exp] 310 / 2e-101 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10027832 [exp] 307 / 2e-100 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10041586 [exp] 44 / 0.0001 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10022337 [exp] 44 / 0.0003 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176600 [exp] 312 / 2e-102 AT1G20200 680 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.009G136900 [exp] 305 / 2e-99 AT1G20200 676 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017700 [exp] 219 / 3e-66 AT1G20200 554 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017800 [exp] 178 / 7e-51 AT1G75990 475 / 5e-165 PAM domain (PCI/PINT associated module) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08375 [flax] [poplar] Rpn3_C Proteasome regulatory subunit C-terminal CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10025072 pacid=23167792 polypeptide=Lus10025072 locus=Lus10025072.g ID=Lus10025072.BGIv1.0 annot-version=v1.0 ATGAGTACCGCGGCAACTCAAGATGTCGATATGAAGGAGCTCCCGGCACCCGCCGCAGCTCCATCCAATTCTACCACCTCATCTACTCTGTCGGTGCTCC AGCATTTGAAGGAGATTGCTTCGTTTATTGAGACCGGGGCTTATGCTCGTGAGGTTCGGAGGATTGCGCGGGCCATCAGGCTGACTATGGCACTGAGGCG GAAGCTCAAGACTTCGATCGTTTCGGCTTTCCTTGACTTTGCTCTCACTCCCGGATCGGAGCCTCATGCCCGTCTGTCATCTTATCTTCCCAAGGAGGAC GAAGAGATGGAGGTCGATACTGCTACATCCGTGGCTCAAGCTCCAGTGAAGCACTGCCTTCCTGAGCTTGAGATATACTGCTACTTGCTGGTCTTGATAT TTCTGATTGATCAAAAGAAATACAATGAGGCTAAAGCTTGTTCGTCGGCGAGCATTGCAAGGCTTAAGAACATCAATAGGAGGACTGTTGATGTTTTAGC ATCCAGGCTGTACTTCTACTACTCTCTTAGCTATGAGCAGACGGGTGATCTTGCTGAAATAAGAGGTAACCTTCTTGCACTTCACCGGATTGCGACATTG CGCCGTGATGAGCTTGGCCAGGAAACACTTCTCAACCTGTTGCTACGCAATTACCTCCATTACAACTTGTATGATCAGGCAGAGAAGCTGAGATCCAAGG CTCCACGATTTGAAGCTCACTCAAACCAGCAGGCTGTGCGGATAGGAGATTTGGAGCTCTTCAAGTCGGTAGCGGAGAAGTTCTCAACCACATTCAGTTC TGACAGGACCCAAAATCTGATCGTTCGACTGCGACACAACGTCATCAGGACCGGACTGAGGAACATCAGCATCTCCTACTCCCAAATCTCGTTGACCGAC ATTGCCAAGAAGTTGAGACTTGATTCTCCCAATCCCGTGGCCGACGCAGAGAGTATCGTGGCCAAGGCAATCCGTGATGGCGCCATTGATGCAACCCTCG ACCACTCAAAGGGATGGATGGTGTCGAAGGAGACCGGAGACATCTACTCGACGAACGAGCCTCAAATGGCGTTCAACTCGCGAATCGCCTTCTGCCTCAA CATGCATAACGAGGCAGTCCGGGCACTCCGATTCCCTCCCAACTCTCACAAGGAGAAAGAGAGTGCGGAGAAGAGAAGGGAGAGGCAGCAGCAGGAACAA GAGCTTGCCAAGCACATTGCGGAGGAAGATGACGACGAGTTTTGA
AA sequence Show only first row Show all	>Lus10025072 pacid=23167792 polypeptide=Lus10025072 locus=Lus10025072.g ID=Lus10025072.BGIv1.0 annot-version=v1.0 MSTAATQDVDMKELPAPAAAPSNSTTSSTLSVLQHLKEIASFIETGAYAREVRRIARAIRLTMALRRKLKTSIVSAFLDFALTPGSEPHARLSSYLPKED EEMEVDTATSVAQAPVKHCLPELEIYCYLLVLIFLIDQKKYNEAKACSSASIARLKNINRRTVDVLASRLYFYYSLSYEQTGDLAEIRGNLLALHRIATL RRDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQAVRIGDLELFKSVAEKFSTTFSSDRTQNLIVRLRHNVIRTGLRNISISYSQISLTD IAKKLRLDSPNPVADAESIVAKAIRDGAIDATLDHSKGWMVSKETGDIYSTNEPQMAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQ ELAKHIAEEDDDEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75990			PAM domain (PCI/PINT associate...		Lus10025072 [exp]	0	1
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10032704 [exp]	4.9	0.8530
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	6.2	0.8404
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	6.9	0.8241
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	10.0	0.8490
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	11.0	0.8267
AT5G47400			unknown protein		Lus10004740 [exp]	11.4	0.8209
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	13.4	0.8285
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025276 [exp]	13.9	0.8173
AT2G16595			Translocon-associated protein ...		Lus10012169 [exp]	14.4	0.8171
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	17.3	0.8270

Compare expression of checked genes

Lus10025072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.