Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 208 / 1e-65 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 202 / 3e-63 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 119 / 6e-32 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT4G15760 118 / 5e-31 MO1 monooxygenase 1 (.1.2) AT2G29720 117 / 1e-30 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 91 / 2e-21 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 47 / 8e-06 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019729 [exp] 277 / 3e-92 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 267 / 3e-88 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 250 / 1e-81 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016398 [exp] 239 / 3e-76 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 190 / 2e-58 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 186 / 1e-56 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 158 / 6e-46 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 156 / 4e-45 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 149 / 1e-42 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176950 [exp] 226 / 4e-72 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 224 / 1e-71 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 166 / 2e-49 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 164 / 2e-48 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 162 / 3e-47 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 157 / 6e-46 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 156 / 2e-45 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 155 / 4e-45 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 154 / 2e-44 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 148 / 2e-42 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10025073 pacid=23167835 polypeptide=Lus10025073 locus=Lus10025073.g ID=Lus10025073.BGIv1.0 annot-version=v1.0 ATGGTACTATACGGTTTTCCTCCAGAGTGGTTGCCATGGAGGAATCAGGCTGGTTCAAGATGCTGCATCTTGCTGATGGGAATGAATGTGGAGGTGTTGA TTGGATGTGACGGAGTGAATTCGATAGTGGCGAAGTGGCTAGGATTGAACGATGCAAAAGTTTCAGGGAGGTTATCAGTTAGGGGTTCTGCAACATTCCC ACAAGGCCATGGCTTTGAATCCAAGCTCTTCATCTTTGCTGGAAATGGCTTTCGAGGTGGGTGTATACCTTGTGATGATAAAACCGTGTACTGGTTTTCA TCTTGGACGCCTTCTACCAAAGAAAAGTGTCATCTGGTAGATAACCCTGCTAAGTTGAAAGAGTATGTGTTGACCAAGCTTCAGAATGCACCTGAGATGA AGAAAGTCGTGGAGAACACCAAGCTGGACAGCGTTAAGTCCTCACCTTTACGCTACAGACAGCCATGGGAGTTCCTGTACAAGAGTTTAACCAGAGGCAA TGTCTGTGTTGCTGGGGATGCTTTGCATTCCATGACCCCAGATCTCGCCCAAGGTGGCTGTGCCGCATTGGAAGATAGCATCGTGCTTGGCAGGTGCGTT GCAGAGGCCTTGAAGAGGAACTCCAGCTTGGAAGAAGAAGAAGAAGAAGAAGAAGAGTGCAGAAGGATTGAGCTTGGCTTGAAGAATTACGCCGGGAGAG GAGATGGAGAAGTTTTAAGCTCATAG
AA sequence Show only first row Show all	>Lus10025073 pacid=23167835 polypeptide=Lus10025073 locus=Lus10025073.g ID=Lus10025073.BGIv1.0 annot-version=v1.0 MVLYGFPPEWLPWRNQAGSRCCILLMGMNVEVLIGCDGVNSIVAKWLGLNDAKVSGRLSVRGSATFPQGHGFESKLFIFAGNGFRGGCIPCDDKTVYWFS SWTPSTKEKCHLVDNPAKLKEYVLTKLQNAPEMKKVVENTKLDSVKSSPLRYRQPWEFLYKSLTRGNVCVAGDALHSMTPDLAQGGCAALEDSIVLGRCV AEALKRNSSLEEEEEEEEECRRIELGLKNYAGRGDGEVLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	0	1
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042641 [exp]	2.4	0.8499
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	3.9	0.8655
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	10.0	0.8494
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10009768 [exp]	14.1	0.7970
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004673 [exp]	14.8	0.8582
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10028026 [exp]	17.2	0.8153
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032747 [exp]	18.7	0.8374
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	20.4	0.7963
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	21.7	0.8380
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	25.5	0.8381

Compare expression of checked genes

Lus10025073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.