Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16940 495 / 1e-169 Splicing factor, CC1-like (.1.2.3) AT5G09880 429 / 9e-145 Splicing factor, CC1-like (.1) AT5G54900 66 / 2e-11 ATRBP45A RNA-binding protein 45A (.1) AT4G34110 66 / 5e-11 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G52380 64 / 7e-11 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G51120 61 / 7e-11 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT1G11650 64 / 1e-10 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 63 / 3e-10 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 61 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49600 62 / 6e-10 ATRBP47A RNA-binding protein 47A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034466 [exp] 717 / 0 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 533 / 0 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10005059 [exp] 511 / 2e-176 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10002093 [exp] 439 / 2e-148 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 427 / 7e-144 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10012071 [exp] 71 / 3e-13 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 71 / 8e-13 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10027911 [exp] 69 / 1e-12 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10010370 [exp] 68 / 1e-11 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137200 [exp] 551 / 0 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 546 / 0 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.005G148100 [exp] 437 / 1e-147 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 430 / 8e-144 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.011G138400 [exp] 71 / 7e-13 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 69 / 2e-12 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G025400 [exp] 67 / 2e-11 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.003G149600 [exp] 67 / 2e-11 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.009G065900 [exp] 65 / 2e-11 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G073200 [exp] 62 / 8e-11 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10025075 pacid=23167845 polypeptide=Lus10025075 locus=Lus10025075.g ID=Lus10025075.BGIv1.0 annot-version=v1.0 ATGGATTTTGACGAGTACGAGTATTTGGAAAAGGCTGTTGAAAATCCTGAACCTGAAACTGTGAAGGAAACTGTTAACGGAAAGGAGACTGGGAAATCAG GAGCGAGAAATCACAGTCGGGGCTCAAAGCACAAAAGTGATGAAAGGGACGAAGAGGATGATGACCACCGTCGCTCAAAGCGGTCGAAATCAAGAGATGA TACCCGCGATCATGATCGTCATAGAGAAAGAGGTTCATCCCGACACCGGTCAGGATCTAAAGATGGAGAAAGGGACCGCCGCCGGAGTAGCCGTGATGGC AGAGATAAGGAGAAGGGAAGGGATGGGGAGGAACGAAACGGGAAGGATAGAGACCGAGAACGAGAGAGGGATAGAGATCGTGGCAGGAGAGAACGTGACA GGGAAAGGGAAAAGGTGAAGGATAAGGATGGTGAAAGAGAGAGATCACGTCGAAGTGAGAGCCGATCCGAAAGAGAGAAAAGTAAGGACAGAGAGCCCAG GGAAAGAGAAAGGGAGAGAGATTTTAAAGAACGAGATATGCATACCAGAAGGAAAAAGGAAGATGGTGCTGAGCCGGAGGCTGATCCGGAGCGGGATCAG AGGACTGTATTTGCTTATCAGATATGTTTGAAGGCTGATGAAAGAGATGTTTATGAGTTTTTTTCGAGGGCTGGAAAGGTTAGTATTGGTACCACTTATA TCCTTTTTAAGATTTTGATCACCATCTTAAATAAGAATGGCTACATTTTCCAGGTACGAGATGTTCGTCTCATAATGGATCGGAATTCAAGACGGTCAAA GGGTGTCGGGTATATTGAATTCTATGATGTGATGTCAGTACCTATGGCAATTGCACTGTCTGGTCAGCCTCTTCGTGGTGTACCTGTGATGGTGAAACCT TCGGAGGCTGAGAAGAACCTTGTTCAGTCAACTGCGACTGCATCCATTGGACCAGGTGGAGCAGTAAATCCTTATTCAGGAGGGGCTCGAAGATTGTACG TTGGAAACCTCCATTTTAACATAACAGAAGATCAACTTCGTCAGGTTTTTGAACCATTTGGTACTGTAGAGTTGGTTCAGCTGCCTGTTGATGAAACTGG ACATTGCAAAGGTTTTGGTTTCATTCAGTTTGCACGTCTCGAGGATGCTAAGAATGCATTAAACTTGAATGGACAAGTGGAGATTGCTGGCCGACCTATC AAGGTGTCATCTGTCACTGATCAAACTGGTCAAGATGGAGGGATGAATGCTGCTGATTTTGATGATGACGAGGGTGGTGGTTTGGCACTGAATGCACGGT CTCGGGTTATGTTGATGCAGAAGTTAGATCGCAGTGGCACTTCCTCGAGCTCTCTGGGGAATTCGGCTTCTGGTACTGGTATCTCGTTACCAGCACCACC ACCGCTGCTGCCTGGTGCTGTGGTTCCTCAGTCTGTTACTTCTCTCCTACCACCTGGACTGCCCGGTGCCATGATCCCTCCGCTGGAAACAATCGGTGTT CCAAGTGAATGTTTACTGTTGAAGAATATGTTTGATCCCCAAACAGAGACAGAACCAGACTTTGATCAAGATATCAAAGATGACGTTGAAGACGAATGCT CAAAATTCGGAACCTTGAGGCATATCTTTGTGGACAAGAATAGCATGGGTTTAGTGTATCTGCGGTTCGAGAATACGCAAGCTGCCATGGGAGCACAACG TGCTCTCCATGGAAGGTGGTTTGCTGGGAAGATGATCACAGCAACATTCATGGTGCCTCCGACATATGAGCAGAAGTTCCCTGATAGCAGGTAA
AA sequence Show only first row Show all	>Lus10025075 pacid=23167845 polypeptide=Lus10025075 locus=Lus10025075.g ID=Lus10025075.BGIv1.0 annot-version=v1.0 MDFDEYEYLEKAVENPEPETVKETVNGKETGKSGARNHSRGSKHKSDERDEEDDDHRRSKRSKSRDDTRDHDRHRERGSSRHRSGSKDGERDRRRSSRDG RDKEKGRDGEERNGKDRDRERERDRDRGRRERDREREKVKDKDGERERSRRSESRSEREKSKDREPRERERERDFKERDMHTRRKKEDGAEPEADPERDQ RTVFAYQICLKADERDVYEFFSRAGKVSIGTTYILFKILITILNKNGYIFQVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLRGVPVMVKP SEAEKNLVQSTATASIGPGGAVNPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQLPVDETGHCKGFGFIQFARLEDAKNALNLNGQVEIAGRPI KVSSVTDQTGQDGGMNAADFDDDEGGGLALNARSRVMLMQKLDRSGTSSSSLGNSASGTGISLPAPPPLLPGAVVPQSVTSLLPPGLPGAMIPPLETIGV PSECLLLKNMFDPQTETEPDFDQDIKDDVEDECSKFGTLRHIFVDKNSMGLVYLRFENTQAAMGAQRALHGRWFAGKMITATFMVPPTYEQKFPDSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16940			Splicing factor, CC1-like (.1....		Lus10025075 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10038331 [exp]	4.6	0.6474
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	6.0	0.6465
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	10.2	0.5750
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	35.4	0.5631
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	39.9	0.5421
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	43.9	0.5420
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10041456 [exp]	45.8	0.5540
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10005989 [exp]	59.0	0.5311
					Lus10004795 [exp]	112.9	0.4774
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015054 [exp]	155.5	0.4553

Compare expression of checked genes

Lus10025075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.