Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38520 609 / 0 Protein phosphatase 2C family protein (.1.2) AT3G51370 580 / 0 Protein phosphatase 2C family protein (.1.2) AT5G66080 564 / 0 Protein phosphatase 2C family protein (.1) AT3G12620 501 / 5e-178 Protein phosphatase 2C family protein (.1.2) AT3G55050 483 / 7e-171 Protein phosphatase 2C family protein (.1.2) AT3G17090 430 / 4e-150 Protein phosphatase 2C family protein (.1.2) AT5G02760 421 / 6e-147 Protein phosphatase 2C family protein (.1) AT4G33920 394 / 7e-136 Protein phosphatase 2C family protein (.1) AT5G06750 380 / 4e-130 Protein phosphatase 2C family protein (.1.2.3) AT3G16560 152 / 2e-41 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024008 [exp] 824 / 0 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 685 / 0 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 682 / 0 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 604 / 0 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 508 / 0 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 506 / 5e-180 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 496 / 6e-176 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10037779 [exp] 461 / 2e-162 AT3G17090 562 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10014024 [exp] 435 / 3e-152 AT3G12620 476 / 1e-168 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137400 [exp] 691 / 0 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 690 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 650 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 631 / 0 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 497 / 2e-176 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 495 / 1e-175 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 460 / 4e-162 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 450 / 3e-158 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 440 / 3e-154 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 398 / 2e-137 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10025076 pacid=23167763 polypeptide=Lus10025076 locus=Lus10025076.g ID=Lus10025076.BGIv1.0 annot-version=v1.0 ATGTTATCTGGGTTGATGAGCTTTCTCAGGGCCTGTTTTGGACCGAGGTCGGATCGAAATGGTCACACCGAGACCGGGGGTCGCCAAGACGGACTTTTAT GGTACAAGGACCATGGACAGCATGTGAATGGTGAATTCTCCATGGCAGTAGTGCAGGCCAACAGTCTGCTTGAGGACCAGAGCCAGCTTGAGTCGGGAAG TTTGAGCTTGAGGCAGGATTCTGGTCCATTTGGTACTTTCGTTGGTGTTTATGATGGGCATGGTGGCCCTGAGACTTCCCGCTATGTTAATGATCACCTT TTCCAGCATCTCAAAAGATTTTCTTCAGAGCAACAGTCAATGTCAGCAGAGGTAATACGGAAAGCATTTCAAGCAACAGAAGAAGGATTTGTCTCGCTTG TTGCAAGGCAATGGCCTATGAAGCCACAGATTGCAGCAGTTGGAACTTGCTGCCTGGTGGCCGTAATTTGCAATGAGACTCTTTATGTCGCAAACCTTGG CGACTCCCGTGCTGTTTTAGGTAGAGCTGTGAAAGCAACTGGAGAAGTTTTGTCGATACAGCTTTCAGATGAGCACAATGTTTGCCATGAGACTGTGAGG CAAGAGCTTTTTGCTTCGCACCCTGAAGACCCGCAGATCGTGGTTTTAAAGCATAATGTATGGCGTGTCAAAGGCATTATCCAGATATCGAAATCCATAG GTGATGTATATCTGAAGAAGTCAGAGTTCAACAGGGAGCCTCTATACGCAAAGTTCAGGGTTCGGGAACCGTTTAAGAAGCCTATATTGAGCGCTGACCC TTCCATTTCGGAATATAAGCTGCAGCCAGTGGATCGATTCGTCATTCTCGCATCTGATGGGCTATGGGAGCACTTAAGCAATCAAGAAGCAGTCGATATA GTTCAGAATCATCCACGGAATGGAAGTGCAAAGAGGCTGGTGAAGGCTGCGCTACAAGAAGCAGCAAAGAAGAGGGAAATGAGGTACTCAGACTTGAAGA AAATCGACCGTGGAGTCCGCCGCCATTTCCACGATGACATCACAGTGATCGTCGTGTTCCTCGACTCTAACCTCGTGAGCCGGGCAACGAACGGCACCGG TGCCGGTCTTGGGAACAAGGCATCGAACGTATCGGTCAGAGGGGGCGGAATCAGCATCCCCTCAAACTCGCTAGCTCCTTGTACGACTCCGGGAAACGCC AATTGA
AA sequence Show only first row Show all	>Lus10025076 pacid=23167763 polypeptide=Lus10025076 locus=Lus10025076.g ID=Lus10025076.BGIv1.0 annot-version=v1.0 MLSGLMSFLRACFGPRSDRNGHTETGGRQDGLLWYKDHGQHVNGEFSMAVVQANSLLEDQSQLESGSLSLRQDSGPFGTFVGVYDGHGGPETSRYVNDHL FQHLKRFSSEQQSMSAEVIRKAFQATEEGFVSLVARQWPMKPQIAAVGTCCLVAVICNETLYVANLGDSRAVLGRAVKATGEVLSIQLSDEHNVCHETVR QELFASHPEDPQIVVLKHNVWRVKGIIQISKSIGDVYLKKSEFNREPLYAKFRVREPFKKPILSADPSISEYKLQPVDRFVILASDGLWEHLSNQEAVDI VQNHPRNGSAKRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRATNGTGAGLGNKASNVSVRGGGISIPSNSLAPCTTPGNA N

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	4.5	0.6357
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	8.8	0.6845
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020356 [exp]	9.8	0.6171
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10009536 [exp]	15.7	0.5818
AT5G25170			PPPDE putative thiol peptidase...		Lus10017127 [exp]	16.9	0.5687
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10035092 [exp]	18.0	0.5887
AT1G76210			Arabidopsis protein of unknown...		Lus10016002 [exp]	19.6	0.5123
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	31.5	0.5594
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10010148 [exp]	39.6	0.5623
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026931 [exp]	40.6	0.5285

Compare expression of checked genes

Lus10025076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.