Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 223 / 4e-61 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 211 / 3e-57 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 208 / 7e-57 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 205 / 3e-56 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 193 / 6e-52 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 188 / 1e-50 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 185 / 6e-49 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 172 / 2e-44 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G19090 166 / 2e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 160 / 3e-42 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024007 [exp] 1216 / 0 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042722 [exp] 212 / 7e-59 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 210 / 2e-57 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041884 [exp] 197 / 2e-55 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 198 / 4e-54 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024039 [exp] 191 / 4e-51 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 189 / 1e-50 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 187 / 2e-50 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10015534 [exp] 187 / 2e-50 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177200 [exp] 817 / 0 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 778 / 0 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 512 / 2e-171 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 234 / 2e-65 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 222 / 4e-61 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G056700 [exp] 207 / 3e-57 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G112300 [exp] 205 / 1e-56 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G077000 [exp] 196 / 1e-52 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 194 / 3e-52 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 194 / 4e-52 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10025077 pacid=23167831 polypeptide=Lus10025077 locus=Lus10025077.g ID=Lus10025077.BGIv1.0 annot-version=v1.0 ATGGGATGTGTTGCTTCGAAGCTAGAGGAAGAGGAAGAAGTGGTGTCCATTTGTAAAGAGAGGAAACGCCAGCTGAAGCAAGCAGTTGATAGGAGACTAG CTCTTGCTGAGTCTCATTGCAGGTACTGTCAATCTCTCTATGCAGTTTCCGCTGCTATAAAGCTGTTTGTGGCTCGCCATACTTCAGCAACTTCAACGTT CCTCATCACACTGCCTCCTCATTCCCCATCACTTCCTCTGAATAAAGAAGGAGAAGAAGGGAATAACTTGATAAACAACCCAATGTTTCTGGAAGAGAAG GTTTCTGACTCAACAACCAATGAAGATAACAACACCAACAACAACATAGCTTGTGAATCTTGTGACTCTTCAACGACTTCTGCGGATTCGAGCGAGGAAG AAGAGTGTAAAGAAGAGGCTGTGAATGTGATGCAACAACAACACCAGCATCAACATCAGCATCAACAGCAACATAATTATTCTTACTACTATATGCACAT GCCTCCTCAAGCAGTAGTTCCACAATCTCCAAGCCAGGATTTTGGGTGGGATTTCTTCAACCCTTTTGATGGGATGAGGCCAGAGGTTATGAGTGGGTAC AGGAGGAGTTTGGAAGATGATTTCAGGGCTGTGAGGGAACAGGAAGGGATTCCTGAGCTGGAAGAGGAAGAAATAAGTAGGGAGAATGAACATAAGCAAA GGGTGTTTGTTGCTGGTGGGGAAGGGAAAGGAGGAAGAGAAGATGTTATAGACAATGGGGATGTGGTTAATGCTGTGGATGGAAATGCGGGTTGTGTTGA AGAGAAGGGACGTTCAGTTATGGAGTCCCCTGAGAAAGGGAGGGAATTGTTGGATGCATTAAAGGACATTGAGGACCATTTCGTTAAAGCTTACGATTCA GGGAAGGATGTTTCAAGGATGCTAGAGGCTAACAAGGTGTACTTGCAGACTGGCCAAGAAGAACTGAAAGAGAATGCAAACAAAATTATCCTGGCTCTGC CATGGCACAGGTCAACTTCGTTCAAACCTTCATCGTGTAAAAGTCTCGTGGCATCAAGTTCTCGTAGCACATCGACTTGGACCGAGTACACGAATGATCT CTTTGATGGTTGTGGTGGGATGAACGCTGGAAGCCATTCTTCAACACTTGGAAGGTTGTATGCATGGGAAAAGAAACTGTATCAAGAGGTTAAGGCTGGA GATGCAACGAGGAAACTGTATGAAAAGAAATGTTCAAAACTAAGAAGCCATGACGTCAGGGGTGTTGATGAGGTCAACATGGACAAGACAAGAGCAGCAC TGAAAGACTTGTATGCCAGGATCCTCGTAGCGATTCGCAGCGCTGAGTCGATTTCGAACAGGATTGAGAAGCTAAGAGATGAAGAACTGCAGCCTCAGAT AGTAGAACTACTAAAAGGCCTAACACGCACCTGGAAGACTATGATGGAATGCCATGAAACTCAGAACAAAATTCTCTTACAAGTGAAATCTTTTGCATGC CCTTCAGCTGGGAAGTTCTGCAACGACTCGCACCGCCTTGCAACTCTCCAGCTCGAGGCAGAGCTACTAAACTGGCGTATGTGCTTCACGGACTATGTCA CAGCTTCGAAAGCCTACGTTGCAAGTCTACATTGCTGGCTCACCAAGTTCTTAGTTCCTGAAGTCGAATTCTACTCCAACGCTAGAAACAGAAGCTTATT AAACTCATCATCATCGTCAATTCCTTCTCTTTCTCAACCAGGCCCTCCATTGCTTCTCATATGCAAGAATTGGCTATCATCAATGGAGAAGCTACCCGAA ACACAGGTCTCCTTTGCATTAAAGAGCTTCGCGAAAGACGTGAGGGCTTTATGGGTTCAGCAAGGGGAAGAGCAGAAGCAGAAGAGGAAAGTAGAAAGCT TGGCTAAGGAGCTTGACAAAAGGACATTGTCGTTTCAGAAGACTGAAACCAGGCTCCTTGAAACCAAGCTAATAGAGTATAATAACTACAATAACAAGGT TGGAATGGAGGAAAGTGAGAATCCTTTTGAGCAGTTAGCTGAGAGGAAAGATGAGTTGGATTTGCTGCAGATGAAGCTGGAGATGGAGAGGACTAAACAC CATGATCATATGCAGGAAACATCCAGGATTACACTGAGTGGATTCCAGACAGGGTTCTTGAGTGTGTTTGAGTCCTTGATTGAGTTTTCCAAAAGTTCCA TGAACATGTACAATGGTCTTGCTGTAGTGAACGACCATAGCAGCAGTGGGAAGCTGGAGAGTCAACCGTATAAGACTACAGAGAGCTCCCAGGTTGGAGA AAATGGTGACAGGTTACCAAAGATTGGATCTTTAAGTTAA
AA sequence Show only first row Show all	>Lus10025077 pacid=23167831 polypeptide=Lus10025077 locus=Lus10025077.g ID=Lus10025077.BGIv1.0 annot-version=v1.0 MGCVASKLEEEEEVVSICKERKRQLKQAVDRRLALAESHCRYCQSLYAVSAAIKLFVARHTSATSTFLITLPPHSPSLPLNKEGEEGNNLINNPMFLEEK VSDSTTNEDNNTNNNIACESCDSSTTSADSSEEEECKEEAVNVMQQQHQHQHQHQQQHNYSYYYMHMPPQAVVPQSPSQDFGWDFFNPFDGMRPEVMSGY RRSLEDDFRAVREQEGIPELEEEEISRENEHKQRVFVAGGEGKGGREDVIDNGDVVNAVDGNAGCVEEKGRSVMESPEKGRELLDALKDIEDHFVKAYDS GKDVSRMLEANKVYLQTGQEELKENANKIILALPWHRSTSFKPSSCKSLVASSSRSTSTWTEYTNDLFDGCGGMNAGSHSSTLGRLYAWEKKLYQEVKAG DATRKLYEKKCSKLRSHDVRGVDEVNMDKTRAALKDLYARILVAIRSAESISNRIEKLRDEELQPQIVELLKGLTRTWKTMMECHETQNKILLQVKSFAC PSAGKFCNDSHRLATLQLEAELLNWRMCFTDYVTASKAYVASLHCWLTKFLVPEVEFYSNARNRSLLNSSSSSIPSLSQPGPPLLLICKNWLSSMEKLPE TQVSFALKSFAKDVRALWVQQGEEQKQKRKVESLAKELDKRTLSFQKTETRLLETKLIEYNNYNNKVGMEESENPFEQLAERKDELDLLQMKLEMERTKH HDHMQETSRITLSGFQTGFLSVFESLIEFSKSSMNMYNGLAVVNDHSSSGKLESQPYKTTESSQVGENGDRLPKIGSLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	0	1
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	3.0	0.9649
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10026114 [exp]	3.2	0.9501
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	4.0	0.9558
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	4.6	0.9554
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	5.3	0.9525
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	5.7	0.9206
AT4G36970			Remorin family protein (.1)		Lus10027302 [exp]	6.8	0.9141
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	11.7	0.9479
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	13.7	0.9325
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	14.0	0.9240

Compare expression of checked genes

Lus10025077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.