Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79580 70 / 1e-12 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT2G46770 62 / 3e-10 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G32770 61 / 1e-09 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT5G04410 60 / 2e-09 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G61910 59 / 3e-09 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT4G10350 59 / 3e-09 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT1G76420 59 / 4e-09 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G12260 58 / 6e-09 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT1G33280 57 / 9e-09 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT3G04060 57 / 1e-08 NAC ANAC046 NAC domain containing protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024006 [exp] 806 / 0 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10010294 [exp] 132 / 2e-33 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10031639 [exp] 128 / 7e-32 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10009858 [exp] 122 / 3e-30 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10033699 [exp] 115 / 1e-27 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10008200 [exp] 99 / 2e-23 ND 43 / 6e-05 Lus10008240 [exp] 101 / 4e-23 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10033676 [exp] 101 / 1e-22 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10031595 [exp] 95 / 4e-22 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 86 / 4e-18 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 82 / 1e-16 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G028300 [exp] 77 / 6e-15 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G231300 [exp] 75 / 2e-14 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.019G063000 [exp] 70 / 2e-13 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.014G163600 [exp] 70 / 1e-12 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G029200 [exp] 68 / 1e-12 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.010G176600 [exp] 67 / 4e-12 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.008G080000 [exp] 67 / 9e-12 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.012G126500 [exp] 66 / 2e-11 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10025078 pacid=23167752 polypeptide=Lus10025078 locus=Lus10025078.g ID=Lus10025078.BGIv1.0 annot-version=v1.0 ATGGCGGTGATCGAGCCAGACATACGGCGCCCGGGCCCGGAGACGAATTTACGGCCATCGGGGTTCAGGTTCTTGCCAACCGACGACGAACTACTCAGAC ATTACCTCTACAACTACGTCAAACACATATACGGACCGGAGGAGTTCTTCCCCATCCGCCACCGCGACATTCACAGCGACGAGCCCTGGGAACTGTGGCA GAGCTTCCAAATCATCGGCGACAACGGCGGATCAGGGCCGGAGAACGACGTCTACTTCTTCGCCGACCTCAAGAAGACGCGGTACACTGACAAGAATCAT GGCCGGAAGATCGGGAAGGGTGGCGGGCACTGGCACGGCGAGGATAGAGGAAAAAAGTTGACTTTGGAAATCGACTACCCTGGCGGCGGAGAAGAGTCAT CGCCGCCGGTTGCTGCAAATTGGGTCGGGTTGAAAAAGAGGTTCAGTTACAGGAACGTTACTCTCAAGAGCGAACAACAGAAGTGGATTCTCCACGAATA TAGCATCAGTAATGATGGCGGATCGAGTTACTTCAGCGAAGTTGTGTGTCGTCTGAGGAACAATAAGTCGCCGACGGCGAGGCAAATATCCGCCGCCTTT GTGAGGGTAAAACGGCCGATTGAGGAATATATTAATGTTAGGGCTGAAAAATCTGATTGTCGTAGTAAAAAAAGGGTACGTTACTCCACTCCGTTGACCA GTCAGCATTTTGCAGAAGAGGTCGTGAGTTCGAACCCTAGCTCCGTAGAAGAGGTCTTGAATTCCGTCTTTTCGTCAAATTTTGATCCAATAGTTCATCT CGAAGAGAATGTCACATGTTTAAACCCTAGCTCGAACCAAGCGAACTATGCTCGGACTTCTTATAACTCTGCCTTCTCGTCGTTAGGGTTTGGTCTAGTA AGCCAACTCCCTCCTCTCGTCGGGAATGTTACATGTTTGAATCCTAGCTCGAACCAATTGGAGTGTGATCAGTGTAATCCTTACTATATAAAGAACAATG CTCCAATGATCGAAGCTTCCTGCAGTTACCAAGACACGAGGATCTCTACGTACCAGCTTGATCCCCTTACCAAATTCAGCTCGACGTTCGAACAAGGCTC GACTAGCAATGTTGCTACTGAATCAACATCAGAGTTCGGCTCGATGTTCGAACAGGGCTCGACTAGCAATGCTGCTACTGCATCGACATCGGAGTTTTAC ACAATGTACGGGCCTATAACTTGCGATGAGATATGCAAGGGAGTATATCGGGATCCGACGCCCTTGGGGTTGTCTGCTTTTGAAATTCAGAGCTTGTTGT ATCCTTCTTCTGATTCTGTGCAATGTAATGATGATGATCACCAGACGGGTGGGATTGAGTCGGCAGTCATTGATGGAGGTCGGGACCAGCAACAACAGAT AGTACAGATACCAGAAGATAAACAGCAGCCGCCATGTGAAGTGATTTCTGATGAGATTGTTTTGAAAGATGATGATGCTAGCTGGTTTGATGTCATTGAT TTTGATTGTGATGCTAGCTGGTTAAATGTCTCGCAATATGATATTGATCCACCTACTGGGTTTCTTTAG
AA sequence Show only first row Show all	>Lus10025078 pacid=23167752 polypeptide=Lus10025078 locus=Lus10025078.g ID=Lus10025078.BGIv1.0 annot-version=v1.0 MAVIEPDIRRPGPETNLRPSGFRFLPTDDELLRHYLYNYVKHIYGPEEFFPIRHRDIHSDEPWELWQSFQIIGDNGGSGPENDVYFFADLKKTRYTDKNH GRKIGKGGGHWHGEDRGKKLTLEIDYPGGGEESSPPVAANWVGLKKRFSYRNVTLKSEQQKWILHEYSISNDGGSSYFSEVVCRLRNNKSPTARQISAAF VRVKRPIEEYINVRAEKSDCRSKKRVRYSTPLTSQHFAEEVVSSNPSSVEEVLNSVFSSNFDPIVHLEENVTCLNPSSNQANYARTSYNSAFSSLGFGLV SQLPPLVGNVTCLNPSSNQLECDQCNPYYIKNNAPMIEASCSYQDTRISTYQLDPLTKFSSTFEQGSTSNVATESTSEFGSMFEQGSTSNAATASTSEFY TMYGPITCDEICKGVYRDPTPLGLSAFEIQSLLYPSSDSVQCNDDDHQTGGIESAVIDGGRDQQQQIVQIPEDKQQPPCEVISDEIVLKDDDASWFDVID FDCDASWLNVSQYDIDPPTGFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10025078 [exp]	0	1
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10014757 [exp]	23.0	0.6534
AT1G23350			Plant invertase/pectin methyle...		Lus10013043 [exp]	64.0	0.5402
					Lus10018846 [exp]	105.1	0.5386
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10017059 [exp]	167.1	0.4989
AT2G25270			unknown protein		Lus10014341 [exp]	228.8	0.5001

Compare expression of checked genes

Lus10025078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.