Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20920 271 / 9e-91 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024004 [exp] 426 / 2e-151 AT2G20920 332 / 8e-115 Protein of unknown function (DUF3353) (.1) Lus10005055 [exp] 298 / 3e-101 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10005056 [exp] 298 / 3e-101 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10027826 [exp] 293 / 2e-99 AT2G20920 309 / 7e-106 Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177300 [exp] 305 / 5e-104 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) Potri.009G137600 [exp] 299 / 1e-101 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1) Potri.019G018300 [exp] 40 / 0.0008 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10025079 pacid=23167860 polypeptide=Lus10025079 locus=Lus10025079.g ID=Lus10025079.BGIv1.0 annot-version=v1.0 ATGGCTGTCACTCTCTCCCTCCGCCTCAACCACCGCCTCCCTTCCTCCTCATCCTCCTCCTTCCTCCGGCCGCCTTCAGTCCCCTTGCCGACATCCCTGA CTTTCAATTCTCGCCGGAGCGAGTTCTGGAAGGGATCAATTTCGCCGCCTCAGCATCGCCGGTTGCTTTCCGCCACCAGAGCAAGCTCTAGAGCAGATGA TCCTGCGCCGTACCGGATGTCGCTGGAGAACGCGCTCCGGCTCCTCGGCGTCCCCGACGGTGCATCGTTCGACGACGTCCTTCGCGCCAAAAACTCCATC CTCGCCTCTTGCAAAGACGACAAGGAGGTGATTGCACAGGTGGAGGCAGCATACGACATGATACTAATGCAAAGCCTGTCCCAACGACGAGCAGGGAAAG TTGCAAGCAGCGGCATCCGTTACGCTGATGTAAAACCTCTAGGCTCTCCAGGTGGTGGTGGTGGGATGGGATCAATGCCTCAATGGCTTCAGACCACAGT CAAGAACGCTTCCGTAACAGCAGAGGCGCCACCCGTCACTAGCGAATTGGGCATACAAGCCGGTGTCTATGGAGCATTGATGGTCCTGACCTACGCGAAT GGGGCTGCCACATCATCCGACCTTCCTTACGCAGGAGCTGACGTACCAGGCCTGCTCCTCGCCACGAGTTTCGGAGCTTCCTTGTACTTCATGACTAAGA AGAACGTCAAACTAGGTAAGGCAACCGCGATTACTTTGGGAGGACTTGTGGCTGGTGCGGTGGCTGGTTCGGCTGTTGAGAGCTGGCTACAGGTTGACAT TGTGCCGTTTCTAGGCCTTCATTCTCCTGCGGCGGTGGTCAGTGAGTTCATTATGGTCTCTCAGGTCTTGGTCTCATTGTACTTAAGGTAG
AA sequence Show only first row Show all	>Lus10025079 pacid=23167860 polypeptide=Lus10025079 locus=Lus10025079.g ID=Lus10025079.BGIv1.0 annot-version=v1.0 MAVTLSLRLNHRLPSSSSSSFLRPPSVPLPTSLTFNSRRSEFWKGSISPPQHRRLLSATRASSRADDPAPYRMSLENALRLLGVPDGASFDDVLRAKNSI LASCKDDKEVIAQVEAAYDMILMQSLSQRRAGKVASSGIRYADVKPLGSPGGGGGMGSMPQWLQTTVKNASVTAEAPPVTSELGIQAGVYGALMVLTYAN GAATSSDLPYAGADVPGLLLATSFGASLYFMTKKNVKLGKATAITLGGLVAGAVAGSAVESWLQVDIVPFLGLHSPAAVVSEFIMVSQVLVSLYLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	0	1
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	1.4	0.8697
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	2.4	0.8560
AT1G20180			Protein of unknown function (D...		Lus10005612 [exp]	3.5	0.8086
AT3G05630		PLDP2, PDLZ2, P...	PHOSPHOLIPASE D ZETA 2, phosph...		Lus10020672 [exp]	4.6	0.8252
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	5.5	0.8508
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	6.0	0.8471
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	6.3	0.8356
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	8.5	0.8196
AT1G16840			unknown protein		Lus10035733 [exp]	8.5	0.8164
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	8.7	0.7730

Compare expression of checked genes

Lus10025079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.