Plant FIBer expression Database

Lus10025080 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04870 62 / 5e-10 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024003
[exp]
966 / 0 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Lus10015935
[exp]
68 / 8e-12 AT3G04870 954 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2)
Lus10009190
[exp]
57 / 3e-08 AT3G04870 854 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G177400
[exp]
653 / 0 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Potri.013G037700
[exp]
64 / 2e-10 AT3G04870 953 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2)
Potri.005G050700
[exp]
58 / 1e-08 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01593 Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence
>Lus10025080 pacid=23167770 polypeptide=Lus10025080 locus=Lus10025080.g ID=Lus10025080.BGIv1.0 annot-version=v1.0
ATGGAGTTGGGGTGCAGGTTGAGGTCCACGACGATTCCTTGTAGCTGCTTAATCAATCCATCTTCATCATCAACTTCAATACATGGGATTGTAAGTTACA
CCAGTAATGGTTTTGGTTGTGGGTTCAAAGCTAACACAGTAGCTGTTCAACGGAGAATCCATGCCATAAGTAGCTCAACAGAACCTCACAGTAAGGAAGA
AGAAGAGGAAGAGAAGGGAACGAGAAAGAAAGTGGCTGTTATTGGCTCTGGCTGGGCTGGTCTTGATGGGAATGGGTTTGGGAGTCCTGATGATGCTGGT
ATCATCCAAGGCTTTTGGTATCCTTACAAGAACATATTTGGTCTGGTTGATGAGCTCGGGATCAAACCCTTCACCAACTGGATGAAGTCTGCGGTCTATT
CAAGTGAAGGCTTGGAGGCTGAGTTTCCTGTCTTCCAAGATCTTCAGCAGCTTCCAGCTCCACTGGGAACCTTGTTTTACACTCAATTCAATCGGCTCCC
ATGGGTGGATAGATTAACTTCCCTTCCCCTTATGGCTGCAGTTGTTGACTTTGATAATACTGACACGGCTTGGAGGAAGTATGACTCAATCACTGCAAGG
GAGCTTTTCAAGCGATTCGGCTGTTCAGGGAGGCTGTTTCGCCAAGTCGTTGATCCATTGATCCATGCTGGCCTGTTTGCTCCACCAGAGCAATGTAGTG
CAGCTGCTACACTTGGAATCCTATACTATACTTCCATTGCTCATCAGAAAGATTTTGATGTGCTATGGTGTCGAGGAGCAGTTAAACAAACAATCTTCAA
TCCATGGAAGGACTCGTTGAAGTCTAGAGGCTGTCGATTCATCAAAGGAACAAAAGTGAAGGATTTGGTAGTCAATGAAGGAACAGGTTCCATTTCTGCA
GTTGCTTGCAGCAATGATGATGTCATCAATGCTGATGCTGTTATTCTGGCTGTTGGGGTTTCAACAGTTCAGGACCTTGTCAAGAATAGTGCAGCATTAC
GTTCAAGGGACGAGTTTCTGAAGGTTCTGAACTTGGCTTCTATTGATGTGATCACTGCTAAGCTTTGGCTTGATAACAAGGTCAACATTCCGAATCCGAG
CAATGCTTGTGCTGCAACAGATGAATCCTTCGGATGGACATTCTTTCACTTGAATGCACTCCATGATGAGCATAAGGAAAGTCCACAAACAGTCCTTCAA
GCCGATTTTTTCAATGCTAATGAGTTCTTACCATTAAGCGACAAGGAAATTGCGAGAAGGGTACTCTTCAACCTCTCCAATTGTGTTAAGGATATTGAGA
ATGCCAACTTGGTTGATATGGACATCTCCACATCCCCAAAGTCCTTGACTCATTTCTTTCCAGGTTCTTACAAGCACATGATGAGAGGCTCCACATCCTT
CCCGAACCTGTTCATGGCCGGAGACTGGATTGTAAACCGTCACGGATCCTGGTCGCAGGAGAAAGCATACGTGACGGGGCTGGAAGCAGCCAATAGGGTT
GTTGATTTGCTGGAAGAAGGAAGCTTTGCAAAGATCATCCCAGTCGAGGAAGATGAGGCTCATGTTCAAGCTCTTCGCGGCATCAACAGGCAGTTAAATG
ACCTCAGAACTCAGCTTCCATTCTCTGATTACTTCCCCCAATGA
AA sequence
>Lus10025080 pacid=23167770 polypeptide=Lus10025080 locus=Lus10025080.g ID=Lus10025080.BGIv1.0 annot-version=v1.0
MELGCRLRSTTIPCSCLINPSSSSTSIHGIVSYTSNGFGCGFKANTVAVQRRIHAISSSTEPHSKEEEEEEKGTRKKVAVIGSGWAGLDGNGFGSPDDAG
IIQGFWYPYKNIFGLVDELGIKPFTNWMKSAVYSSEGLEAEFPVFQDLQQLPAPLGTLFYTQFNRLPWVDRLTSLPLMAAVVDFDNTDTAWRKYDSITAR
ELFKRFGCSGRLFRQVVDPLIHAGLFAPPEQCSAAATLGILYYTSIAHQKDFDVLWCRGAVKQTIFNPWKDSLKSRGCRFIKGTKVKDLVVNEGTGSISA
VACSNDDVINADAVILAVGVSTVQDLVKNSAALRSRDEFLKVLNLASIDVITAKLWLDNKVNIPNPSNACAATDESFGWTFFHLNALHDEHKESPQTVLQ
ADFFNANEFLPLSDKEIARRVLFNLSNCVKDIENANLVDMDISTSPKSLTHFFPGSYKHMMRGSTSFPNLFMAGDWIVNRHGSWSQEKAYVTGLEAANRV
VDLLEEGSFAKIIPVEEDEAHVQALRGINRQLNDLRTQLPFSDYFPQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14210 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoen... Lus10025080
[exp]
0 1
AT5G47435 formyltetrahydrofolate deformy... Lus10028958
[exp]
2.2 0.8724
AT1G68830 STN7 STT7 homolog STN7 (.1) Lus10034273
[exp]
3.5 0.8807
AT3G56160 Sodium Bile acid symporter fam... Lus10019540
[exp]
3.5 0.8783
AT5G38510 Rhomboid-related intramembrane... Lus10023145
[exp]
4.9 0.8870
AT1G68830 STN7 STT7 homolog STN7 (.1) Lus10041490
[exp]
6.0 0.8684
AT5G13410 FKBP-like peptidyl-prolyl cis-... Lus10040937
[exp]
7.7 0.8940
AT4G21190 EMB1417 embryo defective 1417, Pentatr... Lus10039292
[exp]
8.8 0.8600
AT1G74410 RING/U-box superfamily protein... Lus10021628
[exp]
9.8 0.8701
Lus10042279
[exp]
10.1 0.8720
AT3G07670 Rubisco methyltransferase fami... Lus10016087
[exp]
11.8 0.8549

Lus10025080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.