Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38510 841 / 0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G20260 835 / 0 ATPase, V1 complex, subunit B protein (.1) AT1G76030 831 / 0 ATPase, V1 complex, subunit B protein (.1) AT5G08690 90 / 4e-19 ATP synthase alpha/beta family protein (.1) AT5G08670 90 / 4e-19 ATP synthase alpha/beta family protein (.1) AT5G08680 90 / 5e-19 ATP synthase alpha/beta family protein (.1) ATCG00480 89 / 6e-19 ATCG00480.1, ATPB ATP synthase subunit beta (.1) ATMG01190 77 / 5e-15 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1) AT2G07698 77 / 1e-14 ATPase, F1 complex, alpha subunit protein (.1) ATCG00120 74 / 4e-14 ATCG00120.1, ATPA ATP synthase subunit alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024002 [exp] 884 / 0 AT4G38510 954 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10027827 [exp] 883 / 0 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10005057 [exp] 883 / 0 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10035263 [exp] 93 / 6e-20 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034631 [exp] 93 / 6e-20 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035264 [exp] 93 / 6e-20 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 89 / 1e-18 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10034632 [exp] 74 / 7e-14 AT5G08680 875 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034836 [exp] 74 / 1e-13 AT1G78900 1210 / 0.0 vacuolar ATP synthase subunit A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137800 [exp] 852 / 0 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.004G177500 [exp] 845 / 0 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.008G126600 [exp] 87 / 3e-18 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.010G116600 [exp] 86 / 6e-18 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G162800 [exp] 86 / 1e-17 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.010G253500 [exp] 77 / 8e-15 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.008G005000 [exp] 76 / 1e-14 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.013G138000 [exp] 74 / 5e-14 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1) Potri.007G062242 [exp] 74 / 5e-14 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025081 pacid=23167875 polypeptide=Lus10025081 locus=Lus10025081.g ID=Lus10025081.BGIv1.0 annot-version=v1.0 ATGGGGGTTGCTCAAAACGGTCACGACATGGAGGAGGGAACTCTGGAGATCGGAATGGAATACAGGACTGTTTCTGGAGTTGCTGGACCTCTTGTTATTC TTGACAAAGTGAAGGGACCAAAATATCAGGAGATTGTCAATATCAGATTAGCTGATGGAACAACCAGGCGTGGTGAAGTGTTGGAGGTCGATGGAGAGAA AGCTGTTGTCCAGGTGTTTGAAGGAACGTCTGGGATCGATAATAAATTCACCACTGTGCAATTCACTGGGGAGGTTCTGAAAACTCCCGTCTCATTGGAT ATGCTTGGTAGAATATTTAACGGTTCTGGAAAGCCTATTGACAATGGCCCTCCTATCTTGCCCGAGGCCTATCTTGATATTTCTGGAAGTTCTATTAATC CCAGTGAAAGAACTTACCCGGAAGAGATGATACAGACTGGTATTTCTACCATTGATGTCATGAATTCCATAGCTAGAGGACAAAAGATTCCTTTGTTCTC TGCTGCTGGTCTGCCTCATAATGAAATTGCTGCTCAGATTTGTCGTCAAGCTGGTTTGGTTAAGCGGTTAGAGAAGTCAGAAAACCTTCTTGAGGGTAGT GGAGAAGACGACAATTTTGCTATTGTATTTGCAGCCATGGGTGTTAACATGGAAACTGCACAGTTCTTCAAACGTGATTTTGAGGAGAATGGGTCCATGG AAAGGGTTACACTTTTCCTGAACTTGGTTTCAGCTGCTCGAGAAGAAGTTCCCGGAAGACGTGGATATCCTGGGTATATGTACACCGATCTGGCTACAAT TTATGAGCGGGCTGGGCGTATTGAAGGACGCACTGGGTCCATTACCCAGATTCCAATTTTAACTATGCCTAATGATGATATCACACATCCAATTCCTGAT CTTACCGGATATATCACTGAAGGGCAAATATACATTGATAGGCAACTCCACAACAGACAGATCTTCCCTCCAATCAATGTTCTTCCGTCCCTATCTCGTC TGATGAAGAGTGCCATTGGCGAAGGGATGACTCGTCGAGACCATTCTGACGTGTCCAACCAGCTATATGCAAACTATGCTATTGGAAAGGATGTTCAGGC AATGAAAGCCGTGGTGGGAGAAGAAGCTCTTTCTTCAGAAGATCTGCTATACTTGGAGTTCTTGGACAAATTCGAGAGGAAGTTCGTCGCTCAAGGAGCC TACGACACCCGCAACATCTTCCAATCCCTAGACTTGGCGTGGTCACTGCTTCGCATCTTCCCTCGCGAGCTGCTCCACCGTATACCAGCAAAGACCTTGG ACTTATTCTACAGCCGAGATTCGACCAATTGA
AA sequence Show only first row Show all	>Lus10025081 pacid=23167875 polypeptide=Lus10025081 locus=Lus10025081.g ID=Lus10025081.BGIv1.0 annot-version=v1.0 MGVAQNGHDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLADGTTRRGEVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD MLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSENLLEGS GEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPIPD LTGYITEGQIYIDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGA YDTRNIFQSLDLAWSLLRIFPRELLHRIPAKTLDLFYSRDSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10025081 [exp]	0	1
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10022152 [exp]	1.0	0.8948
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	4.9	0.8500
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	5.1	0.8945
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10007692 [exp]	6.7	0.8883
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006062 [exp]	11.4	0.8798
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	11.5	0.8698
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	11.5	0.8880
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040564 [exp]	12.6	0.8681
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	13.0	0.8455
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	14.4	0.8108

Compare expression of checked genes

Lus10025081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.