Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38500 723 / 0 Protein of unknown function (DUF616) (.1) AT1G28240 275 / 7e-86 Protein of unknown function (DUF616) (.1) AT1G53040 254 / 2e-78 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT4G09630 250 / 5e-75 Protein of unknown function (DUF616) (.1) AT2G02910 243 / 9e-75 Protein of unknown function (DUF616) (.1) AT1G34550 238 / 2e-70 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT5G42660 215 / 4e-64 Protein of unknown function (DUF616) (.1) AT5G46220 180 / 5e-51 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024001 [exp] 957 / 0 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 277 / 3e-86 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 275 / 1e-85 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 258 / 4e-79 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 254 / 5e-79 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 249 / 2e-75 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 241 / 4e-72 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 238 / 6e-71 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 213 / 4e-63 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138000 [exp] 798 / 0 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 778 / 0 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 285 / 3e-89 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 275 / 1e-85 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 272 / 4e-85 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G119300 [exp] 271 / 1e-84 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.010G094000 [exp] 240 / 2e-73 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 245 / 5e-73 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 242 / 4e-72 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 218 / 6e-65 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10025082 pacid=23167743 polypeptide=Lus10025082 locus=Lus10025082.g ID=Lus10025082.BGIv1.0 annot-version=v1.0 ATGGAGAGCGAGGTTCCACGGTCTGTTTCTTCCCGCGCGACCAGGAGAGGAGAAAGGACCAATCAAATCCCTCTCTCAAAAGGTGAGCAAGACGGGTTCT TTTCATCCGGGAAACTTCCCAGTGATTACCCAATGAAAATGCTGTGGAAGCGAGGGTTTATCCGGCTGGTGTTCGTAGCTGGGATCGTTTGGATGCTGCT CATTCTTGTTGTGCTGCTGTTCCACGTCTGGTCTTGCCAATCTTCCTATGTATTCTTTTCAGCTATTTGTAACAAAGAAAGCAAGGTATACAACCTTCTA AACACGTGGGGTTTTGTACAGCAACAACACCGTTGTCCAATACCTGTTGCTAATGATCCTGACAAGATAGTTATCCCTGAGGGGAAGACTTCGGACAGTG TCATTAATAATCTTTCTTACATTATGGATGATGATCCCGTCAATAATGGATCATCCCCGTTATTTGGAGGACATATAAGTTGGTCACAAAGAGAAGAGAG TTTCAAGTTAAAACAGTCCATGAAGGTTCATTGTGGCTTTATACGCAATGGTGGTTCGGAAATGGATCCCAGTGACATCGAATATGTCAAGAAGTGTAGG TTCGTTGTCGCTTCCGGGATTTTCGACGGATATGATGTGCCTCACCAGCCTATTAATATAAGCCCACGTTCCAAGAAGCTCTTCTGTTTTCTTATGGTGG TGGACGAGGTATCTCTTGAGTTCATAAACGAAAATACCACCATTACGAAGGACAGAAAAGGTGGTCAGTGGGTTGGCATCTGGCGTCTCATTCCATTGAA GAACCCACCTTACGATGAGCCCAGGAGGAATGGCAAAGTTCCGAAAATCTTGACACACAGATTGTTCCCTCAAGCTCGTTACAGCATTTGGATCGATGGT AAAATGGAGCTGATAGTTGATCCCCTGCTGTTACTTGAAAGATACTTATGGCGGGACAAGAACACGTTTGCTATTGCTCAGCATAAGCATCATCGTAGCA TATATGAAGAAGCGGATGCGAACAAAAGGAGGAAAAGATATGCCCGGCCTCTCATTGATTTCCATATGAAGATTTATAGATACGAAGGGGTAGAACCCTG GAGTCCCAAGTCAGGCACAATCAGCGATGTGCCAGAGGGAGCAGTGATCATCAGGGAGCACACAGAACTGAGCAATCTGTTTAGCTGCCTGTGGTTCAAC GAAGTCCATCTGTTCACTCCAAGAGACCAGCTGAGTTTCGGGTACGTAGTGCACAGGCTAGGGAGTTCGTTCAAGTTCTTCATGTTCCCGAATTGCGAGT ACTACTCGTTATTCGTGCTGCATCCACACACGAGGGAACATTCGTCCAAGGTGGAGTGGGTGAAGAGTTTGAGTGAGTTTAAGGGTGAAGGAAGCAGCAT GAGAGAGAGTAGAGGTGGGTTAGGTCTGTGGACTCCTTACCCTGGTGATCTTACATCTGTAGTTTTGCCAAAAGTTGTACGAACATCGAAAGCGGGTTAG
AA sequence Show only first row Show all	>Lus10025082 pacid=23167743 polypeptide=Lus10025082 locus=Lus10025082.g ID=Lus10025082.BGIv1.0 annot-version=v1.0 MESEVPRSVSSRATRRGERTNQIPLSKGEQDGFFSSGKLPSDYPMKMLWKRGFIRLVFVAGIVWMLLILVVLLFHVWSCQSSYVFFSAICNKESKVYNLL NTWGFVQQQHRCPIPVANDPDKIVIPEGKTSDSVINNLSYIMDDDPVNNGSSPLFGGHISWSQREESFKLKQSMKVHCGFIRNGGSEMDPSDIEYVKKCR FVVASGIFDGYDVPHQPINISPRSKKLFCFLMVVDEVSLEFINENTTITKDRKGGQWVGIWRLIPLKNPPYDEPRRNGKVPKILTHRLFPQARYSIWIDG KMELIVDPLLLLERYLWRDKNTFAIAQHKHHRSIYEEADANKRRKRYARPLIDFHMKIYRYEGVEPWSPKSGTISDVPEGAVIIREHTELSNLFSCLWFN EVHLFTPRDQLSFGYVVHRLGSSFKFFMFPNCEYYSLFVLHPHTREHSSKVEWVKSLSEFKGEGSSMRESRGGLGLWTPYPGDLTSVVLPKVVRTSKAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38500			Protein of unknown function (D...		Lus10025082 [exp]	0	1
AT1G80500			SNARE-like superfamily protein...		Lus10041670 [exp]	4.0	0.7414
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	4.5	0.7524
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	4.9	0.7553
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	6.5	0.7456
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	6.6	0.7641
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	7.4	0.7650
AT5G59613			unknown protein		Lus10040848 [exp]	8.7	0.7214
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	9.4	0.7282
AT5G17190			unknown protein		Lus10034347 [exp]	9.9	0.7411
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	14.3	0.7524

Compare expression of checked genes

Lus10025082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.