Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16950 1291 / 0 ATTRN1 transportin 1 (.1.2) AT2G16960 457 / 1e-151 ARM repeat superfamily protein (.1.2) AT5G53480 88 / 2e-17 ARM repeat superfamily protein (.1) AT3G08943 87 / 2e-17 ARM repeat superfamily protein (.1) AT3G08947 84 / 2e-16 ARM repeat superfamily protein (.1) AT4G27640 52 / 2e-06 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023999 [exp] 1661 / 0 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10008864 [exp] 79 / 1e-14 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 78 / 3e-14 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 77 / 5e-14 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 77 / 5e-14 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 76 / 8e-14 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 46 / 0.0002 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10034202 [exp] 46 / 0.0002 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138200 [exp] 1447 / 0 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 1444 / 0 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.015G010400 [exp] 92 / 1e-18 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 89 / 1e-17 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 84 / 3e-16 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 75 / 2e-13 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 57 / 5e-08 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 48 / 4e-05 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10025083 pacid=23167843 polypeptide=Lus10025083 locus=Lus10025083.g ID=Lus10025083.BGIv1.0 annot-version=v1.0 ATGGCGGCGACGGCGACTGTTGCTTCATCGTGGCAGCCGCAGGAAGGAGGCGTGAAGGAGATCTGCGGCTTATTGGAGCTCCAGATTTCGCCGTCTTCCA CTGCCGATAAGTCCCAGATTTGGCAGCAGCTGGAGCTCTACTCTCAGCACGCCGATTTCAACAACTACCTCGCCTTCATCCTCGCTCGTGCCGAGGGTAC ATCAGTGGAAATTCGACAAGCTGCTGGTCTTCTACTAAAGAACAACCTTGGGAAGGCCTATAAGTCTATGGCTCCTGAAAATCAACAGTATGTTAGGTCA GCAATACTTCCGAGCATAGCAGCACCCGATAAGCATATAAGATCAACTGTTGGGACCATCATCACAGTCATAGTGCAGCTTGGGGGAGTTGTGGGATGGC CCGAGTTACTACAAGCTCTTGTTACTTGCATGGAGAGTAATGACTTGAATCACATGGAAGGTGCGATGGATGCCCTGTCTAAGATTTGTGAAGATGCCCC TCAGCTATTGGATTCTGATGTTCCTGGTTTACCTGATCGTCCCATCCAGATTTTCCTTCCTCGATTATACCAGTTTTTTCAGTCACCACATACCTCTTTG AGAAGGATGGCCCTGGGTTCTGTAAATCAATACATTATGTTGATGCCGGCTGCTCTATATGCATCCATGAACCAGTATCTTCAGGGATTATTTGTTCTTG CTAATGATCCTGCTCCAGAAGTTCGAAAATTGGTTTGTGCAGCTTTTGTTCAGCTGATTGAAGTTCGTCCGTCCTTTCTAGAGCCACATTTAAGACAAGT CATGGAGTACATATTGCAAGTCAACAAGGATGGTGATGAAGAAGTGGCTCTTGAAGCTTGTGAATTTTGGTCTGCATATTGTGATACTCAGTTGCCGCCT GAGAACTTGAGAGAATTCTTGCCACATTTGATTCCGGTTTTATTATCAAACATGGTTTATGCTGATGATGATGAGTCCCTTGCTGAAGCCGAGGAGGAGG ACTCACTTCCAGACAGGGATCAGGATCTGAAACCTCGTTTTCATGCATCAAAATTTCATGGATCAGAAGATGGGGAAGATGATGATGATGACATAGTAAA TGTTTGGAATTTAAGAAAATGCAGTGCCGCTGCTCTTGACGTTCTGTCAAATGTGTTTGGTGATGAGATTCTCCCATCATTTATGCCTGTTGTTCAGAGT AAGTTGGCTGCTACTGGTGACGAGTCTTGGAAGGAGAGGGAAGCAGCTGTCTTGGCTATTGGTGCTGTCGCTGAGGGTTGCATTACTGGTCTTTATCCAC ATCTACCTCAGATGGTTGAATTTCTGATCCCTCTTTTGGATGATAATTTCCCCCTCATACGGAGTATATCTTGCTGGACGCTCTCTCGATTCAGCAAATT CATTGTTCAGGAAAGTGGCCATGAGAAAGGTTATGAGCATTATGACAAGGTCCTTATGGGTATTCTCCGGAGAATATTGGACAATAACAAGAGGGTCCAA GAGGCTGCTTGTTCAGCGTTTGCAACATTTGAAGAGGAGGCTGCTGAGGAGTTGGTACCACGTTTGGAAGTCATTCTGCAGCACCTCATGTGCGCTTTTG GGAAGTATCAGAGAAGAAATCTCAGGATTGTTTACGATGCCATTGGAACTCTGGCAGATGCTGTTGGTGCAGAGCTTAATCAGCCCACGTACCTTCAAAT TTTGATGCCACCATTGATTGCAAAATGGCAACAACTCTCAAATACAGACAAGGATCTATTTCCACTATTAGAGTGCTTTACATCCATAGCACAGGCACTG GGTACTGGATTCTCTCAGTTTGCTCAACCTGTGTTCCAAAGGTGCATAGAGATCATTCACGCGCAACAGCTGGCAAAGGTTGATCAAGCTACTGGTGGAG CTCTTTACGATAAAGAGTTCATTGTTTGCTCTTTGGATCTTCTTTCTGGGCTTTCTGAGGGTCTTGGTATTGGAATTGAGAGTTTGGTATCGCAAAGTAG TTTGAGAGACCTGCTTCTGCAGTGCTGCATGGATGATGCTTATGATGTTCGGCAGAGCGCCTTTGCTCTTCTTGGGGACCTTGCAAGAGTATGTGCTGTT CATTTGAATCCTCGTTTACCAGAATTTCTGGATGTTGCAGCGAAGCAGCTGAACGCTCCAAACCTAAAGGAAACTCTTTCAGTGGCGAACAATGCCTGCT GGGCTATCGGAGAGTTAGCTGTTAAGATCCAAAAAGAGATCTCCCCTATTGTTGTCAATGTCATCTCTTACCTGGTGCCAATTCTACAACACTCAGAGGA GTTGAACAAGTCGCTTGTAGAAAATACTTCCATCACACTAGGAAGATTGGCATGGGTTTGTCCTGAGCTAGTGTCCCCCCACATGGAGCATTTTATGCAA CCTTGGTGCATTGCTTTGTCTATGATACGTGATGATGTTGAGAAGGAAGATGCATTCCGAGGTCTATGTGCAATGGTTAGAGCAAATCCATCAGGCGGTC TAAGTTCACTTGTTTTCATGTGCAAAGCCATCGCTAGTTGGCATGAAATAAAGAGTGAAGACCTGCACAATGAAGTTTGCCAAGTGTTGCATGGTTATAA ACAGCTACTGAGGGATGGGGCATGGGACCAATACATGTCTGCTTTGGATCCCCCAGTAAAGGAGAAGCTATCCAAATACCAAGTATAA
AA sequence Show only first row Show all	>Lus10025083 pacid=23167843 polypeptide=Lus10025083 locus=Lus10025083.g ID=Lus10025083.BGIv1.0 annot-version=v1.0 MAATATVASSWQPQEGGVKEICGLLELQISPSSTADKSQIWQQLELYSQHADFNNYLAFILARAEGTSVEIRQAAGLLLKNNLGKAYKSMAPENQQYVRS AILPSIAAPDKHIRSTVGTIITVIVQLGGVVGWPELLQALVTCMESNDLNHMEGAMDALSKICEDAPQLLDSDVPGLPDRPIQIFLPRLYQFFQSPHTSL RRMALGSVNQYIMLMPAALYASMNQYLQGLFVLANDPAPEVRKLVCAAFVQLIEVRPSFLEPHLRQVMEYILQVNKDGDEEVALEACEFWSAYCDTQLPP ENLREFLPHLIPVLLSNMVYADDDESLAEAEEEDSLPDRDQDLKPRFHASKFHGSEDGEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPSFMPVVQS KLAATGDESWKEREAAVLAIGAVAEGCITGLYPHLPQMVEFLIPLLDDNFPLIRSISCWTLSRFSKFIVQESGHEKGYEHYDKVLMGILRRILDNNKRVQ EAACSAFATFEEEAAEELVPRLEVILQHLMCAFGKYQRRNLRIVYDAIGTLADAVGAELNQPTYLQILMPPLIAKWQQLSNTDKDLFPLLECFTSIAQAL GTGFSQFAQPVFQRCIEIIHAQQLAKVDQATGGALYDKEFIVCSLDLLSGLSEGLGIGIESLVSQSSLRDLLLQCCMDDAYDVRQSAFALLGDLARVCAV HLNPRLPEFLDVAAKQLNAPNLKETLSVANNACWAIGELAVKIQKEISPIVVNVISYLVPILQHSEELNKSLVENTSITLGRLAWVCPELVSPHMEHFMQ PWCIALSMIRDDVEKEDAFRGLCAMVRANPSGGLSSLVFMCKAIASWHEIKSEDLHNEVCQVLHGYKQLLRDGAWDQYMSALDPPVKEKLSKYQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	0	1
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	1.4	0.8977
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	3.0	0.8439
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	4.5	0.8534
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	4.7	0.8964
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	4.9	0.8600
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	4.9	0.8766
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	8.1	0.8520
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	9.2	0.8511
AT1G27900			RNA helicase family protein (....		Lus10036991 [exp]	11.0	0.7396
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	12.0	0.8460

Compare expression of checked genes

Lus10025083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.