Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38490 53 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023998 [exp] 147 / 2e-41 AT3G09880 359 / 3e-117 Protein phosphatase 2A regulatory B subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177800 [exp] 76 / 9e-18 AT4G38490 69 / 2e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025084 pacid=23167735 polypeptide=Lus10025084 locus=Lus10025084.g ID=Lus10025084.BGIv1.0 annot-version=v1.0 ATGTTGACAAGCTGCATGAATTGGCACATGTCGCCTTCTATTACTAGGGTTCCTAACAACTGCTGTTCAGGTTTGCTTGCTCCATGTATTGCTAGACTTC CATATGGAACTATCAAATTCGATCAAAGGATGAGTAAAAAGAATTCCTGTTGGTTTCAAAGAAGGCTTCCAGGAGGTACAATGTGGAAGTCTTCAGTGAG GAATTCTCATGTCTCGTCTGCCGGAAGTGATGGTTACCGGCTGAACCATGCAGACAATTTTCCTAAGGTGGAACCGCTCTCGATAATCCTTATGAAGAAG TTGAGATCTGTATTAGTTTTCCTGGTAGAGCAACCAAGTCAGCTTAAGCACTTGGAGTGGCCAGGTTTCCAGAGCACGCTGACGACTGCTACGCTAACCC TTGTTCTTGTTGCGCTGCTCATCGTGGCGCTGTCATCCGTTGACTCCATATTATGCTATCTACTGGCTTTGTTCCTTAGGAGAACTGCATGA
AA sequence Show only first row Show all	>Lus10025084 pacid=23167735 polypeptide=Lus10025084 locus=Lus10025084.g ID=Lus10025084.BGIv1.0 annot-version=v1.0 MLTSCMNWHMSPSITRVPNNCCSGLLAPCIARLPYGTIKFDQRMSKKNSCWFQRRLPGGTMWKSSVRNSHVSSAGSDGYRLNHADNFPKVEPLSIILMKK LRSVLVFLVEQPSQLKHLEWPGFQSTLTTATLTLVLVALLIVALSSVDSILCYLLALFLRRTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38490			unknown protein		Lus10025084 [exp]	0	1
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	17.9	0.7810
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031131 [exp]	23.8	0.7965
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10040631 [exp]	25.1	0.7898
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028850 [exp]	25.3	0.7852
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	27.8	0.7663
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	29.7	0.7419
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	30.4	0.7861
AT1G53800			unknown protein		Lus10003930 [exp]	33.7	0.7934
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10025158 [exp]	62.9	0.7590
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	76.7	0.7490

Compare expression of checked genes

Lus10025084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.