Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09880 347 / 3e-114 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 344 / 4e-113 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 344 / 5e-113 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 342 / 1e-112 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 343 / 3e-112 Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 340 / 1e-111 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 336 / 2e-110 Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 336 / 5e-110 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 319 / 8e-104 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023998 [exp] 905 / 0 AT3G09880 359 / 3e-117 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10032082 [exp] 353 / 2e-116 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10023920 [exp] 346 / 5e-114 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10021511 [exp] 336 / 6e-111 AT3G09880 739 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10022612 [exp] 336 / 3e-110 AT3G09880 770 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10014417 [exp] 334 / 3e-109 AT5G03470 759 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10014619 [exp] 325 / 9e-108 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 330 / 1e-107 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10037057 [exp] 331 / 6e-107 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138400 [exp] 608 / 0 AT3G09880 336 / 4e-110 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.004G177900 [exp] 570 / 0 AT3G26020 363 / 3e-121 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 351 / 4e-116 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054300 [exp] 346 / 8e-114 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 344 / 7e-113 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G180000 [exp] 342 / 4e-112 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 341 / 4e-112 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.006G122300 [exp] 340 / 1e-111 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 336 / 1e-109 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.018G034200 [exp] 332 / 1e-108 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10025085 pacid=23167873 polypeptide=Lus10025085 locus=Lus10025085.g ID=Lus10025085.BGIv1.0 annot-version=v1.0 ATGGGTGTTTTCAGGAATAACAGCCAACAGAGGGATTTGGTGGCAGCACCCTTGCCAAAGAAAAGAACATCCACAACACTCCAGCATCTCTTCAACTTGG AGTCCAACAACAAAGAGTGTTGCAGTCCCAAGTTAGGGAAGCAATTATCATTATCATTATCATCATCTTCGAAAGGCCATTCGGAGAACGAAGAGATCAT GTCCTTAATATCTCACTGCTCCACATTCTTCTTCACCTTCGCGGACGAATCCGAATCCTCATCAGACCAGGAACTCAAAAGAGTGAAGCTTCTCCAGCTA CTCTCCATCATGAAAACCCTAAAAAAACAGCTTCCTGATCACGTCATCTCCTCTCTCGTCACCATGATCGCCGCCAATCTCTTCAGACCACTTTCTCCAT CATCAAACAACAACAACAATGTGATGATTCATTTGGCTCCTACCGAAGAAAGCGAGGATCTTGTTTCGTCACTTTCGCCACTATGGTCACACCTCCAAGT CATATACGACATCCTCCTCAGGCTGCTATTGAACGTGGATGCGAAGTCGATTCGCTACTTCGTAAACCAGCAGTTCGTGGTCGGACTCCTCGTGCTGTTC CAGTCGGAGGATCCGAGAGAAAGAGAGAGCGTTAAGAACGTTTACCACAGGATATACTCCAAGTTCACCTTCTACAGAGGGTTCATGAGGAAGTCGATGA ACGACGTCCTCCTGCACTATGTTTTCGATCCCGAGTTTAAGCATTGTGGGATCGGGGAGCTGCTCGAGATATGGGGGAGTATCATTAACGGATTCACGGT CCCGCTTAAGGAAGAGCATAAGGTGTTCTTGACGAGAGTGCTGATTCCTTTGCACAAACCGAAAGGGATGGTTGCTTATCACAGGCAGCTGGGTTACTGT ATGACTCAGTTTGTGCAGAAGGAGCCTATGATGGGTGGGTTGGTTGTTAGGGGGATTTTGAAGTATTGGCCGGTCACTAATTGCCATAAGGAAGTTGTGA TGATCAGTGAGTTGGAAGAGTTGGTGGAGAATATGGATCCTGATCATTACAGAAGGTTGGCTTTGCCGTTATGCACCCAGATCACTAGATGCCTCAACAG CTGGAACTCGCAGGTAGCAGAGCGAGCGCTATACATATGGAACAACGAGGTGTTCGTAAAGATGGCAACATCAGCAATAGAACAAGTGTTCCCAGTAGTG GTGGAAGGGATGGAGAAGAACTTGAAAGGGCACTGGAGCAGCAGCGTGAAGCAGCTGACGGAGAATGTGAAGACGATGGTTGAGGAGATGGATCAAACCC TTTACGACAAGTGTCTGCGGGAGATTGGGCACAAGGAATTCGTAGCGAGGCAGGAAGAGATGAAGAGGAAGGCTAAATGGGAAAGAATTGAACTTCAGGC AGATATGAACGGCCAGCGCCAGATTCTTCATCATCACCACCATCATCATCATCATCAGTTTGTTCAGTCGCCGCGGCCAGCTGCAGCTCAACTAGCAGCA TACATTGTCTCCCATTAG
AA sequence Show only first row Show all	>Lus10025085 pacid=23167873 polypeptide=Lus10025085 locus=Lus10025085.g ID=Lus10025085.BGIv1.0 annot-version=v1.0 MGVFRNNSQQRDLVAAPLPKKRTSTTLQHLFNLESNNKECCSPKLGKQLSLSLSSSSKGHSENEEIMSLISHCSTFFFTFADESESSSDQELKRVKLLQL LSIMKTLKKQLPDHVISSLVTMIAANLFRPLSPSSNNNNNVMIHLAPTEESEDLVSSLSPLWSHLQVIYDILLRLLLNVDAKSIRYFVNQQFVVGLLVLF QSEDPRERESVKNVYHRIYSKFTFYRGFMRKSMNDVLLHYVFDPEFKHCGIGELLEIWGSIINGFTVPLKEEHKVFLTRVLIPLHKPKGMVAYHRQLGYC MTQFVQKEPMMGGLVVRGILKYWPVTNCHKEVVMISELEELVENMDPDHYRRLALPLCTQITRCLNSWNSQVAERALYIWNNEVFVKMATSAIEQVFPVV VEGMEKNLKGHWSSSVKQLTENVKTMVEEMDQTLYDKCLREIGHKEFVARQEEMKRKAKWERIELQADMNGQRQILHHHHHHHHHQFVQSPRPAAAQLAA YIVSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10025085 [exp]	0	1
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	2.8	0.9103
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	4.5	0.8946
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	4.5	0.8930
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	6.7	0.8606
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	12.5	0.8688
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	12.5	0.9205
AT1G70250			receptor serine/threonine kina...		Lus10032228 [exp]	16.3	0.8519
					Lus10026314 [exp]	16.5	0.8514
AT2G46640			unknown protein		Lus10030218 [exp]	18.2	0.9034
					Lus10042355 [exp]	22.4	0.8440

Compare expression of checked genes

Lus10025085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.