Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023996 [exp] 227 / 1e-77 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138700 [exp] 76 / 4e-18 ND / Potri.004G178500 [exp] 68 / 3e-15 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025086 pacid=23167778 polypeptide=Lus10025086 locus=Lus10025086.g ID=Lus10025086.BGIv1.0 annot-version=v1.0 ATGGAGCTAAGAGTCAACCATCTTGCAGCAGGGGAAAGGAAGGTGTCATCCCCGAAACGAGAGAGGTCGATGAAAGGAAGAAGGCTGACGAGGAGTAACC AGCTACAGCACCACCAGCAGCTGCTCGAATCGATTGCGAGAGCCAACAGTGGAGGAGGCGTTGTTAGTCATGAAGGAGGAGGCGGTGGAGTTGTTAGGAT GAAGGTGCTGGTGAAGAAGCAAGATTTAAAGCTGATGCTGGAGCTATTGGGAGATGGCAAGTTGCAGAGCAGTAGCTTCAGGCCTATTGGCGCTGAAACC GAATTGCCTTCATCGTCGTTCTCTAATGTGGAACAAAGATTGAATCTTTTGAGGAGGAAGCATGTGTCGAGAGGAAATGGTGGAAAGGGTTGCCGGGATT CGTCCCCGCGGTCGTGGATTCCAGCGCTTCAAAGCATTCCGGAGTAG
AA sequence Show only first row Show all	>Lus10025086 pacid=23167778 polypeptide=Lus10025086 locus=Lus10025086.g ID=Lus10025086.BGIv1.0 annot-version=v1.0 MELRVNHLAAGERKVSSPKRERSMKGRRLTRSNQLQHHQQLLESIARANSGGGVVSHEGGGGGVVRMKVLVKKQDLKLMLELLGDGKLQSSSFRPIGAET ELPSSSFSNVEQRLNLLRRKHVSRGNGGKGCRDSSPRSWIPALQSIPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025086 [exp]	0	1
					Lus10023996 [exp]	9.5	0.8670
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	20.0	0.7678
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	22.1	0.7297
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10036147 [exp]	38.4	0.7974
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	38.5	0.7593
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10021626 [exp]	48.6	0.7976
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	59.6	0.7964
AT2G17080			Arabidopsis protein of unknown...		Lus10023954 [exp]	60.7	0.7560
AT1G50720			Stigma-specific Stig1 family p...		Lus10011117 [exp]	63.8	0.7967
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039734 [exp]	73.9	0.7317

Compare expression of checked genes

Lus10025086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.