Plant FIBer expression Database

Lus10025087 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16980 364 / 3e-122 Major facilitator superfamily protein (.1.2)
AT2G16990 345 / 5e-115 Major facilitator superfamily protein (.1.2)
AT2G16970 320 / 2e-105 MEE15 maternal effect embryo arrest 15, Major facilitator superfamily protein (.1)
AT5G42210 199 / 1e-60 Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023994
[exp]
791 / 0 AT2G16980 412 / 2e-141 Major facilitator superfamily protein (.1.2)
Lus10005626
[exp]
500 / 1e-175 AT2G16980 396 / 4e-135 Major facilitator superfamily protein (.1.2)
Lus10004157
[exp]
478 / 4e-166 AT2G16980 394 / 2e-133 Major facilitator superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G178600
[exp]
541 / 0 AT2G16980 417 / 2e-143 Major facilitator superfamily protein (.1.2)
Potri.009G138900
[exp]
506 / 4e-178 AT2G16990 405 / 1e-138 Major facilitator superfamily protein (.1.2)
Potri.005G245900
[exp]
471 / 3e-164 AT2G16980 412 / 3e-141 Major facilitator superfamily protein (.1.2)
Potri.002G016200
[exp]
460 / 5e-160 AT2G16980 384 / 5e-130 Major facilitator superfamily protein (.1.2)
Potri.008G022100
[exp]
235 / 2e-72 AT2G16980 211 / 3e-63 Major facilitator superfamily protein (.1.2)
Potri.010G237300
[exp]
220 / 1e-66 AT2G16980 203 / 3e-60 Major facilitator superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Lus10025087 pacid=23167880 polypeptide=Lus10025087 locus=Lus10025087.g ID=Lus10025087.BGIv1.0 annot-version=v1.0
ATGGAGAAGCTAATGGAGTTGGGGCATCTGTTGATGACGGTGTTCCTGTCGGCGTCGTCGACCATCATGGTGTTCCCGGCCATCACCGACGTCACCATGG
CCGCCCTCTGCCCCGGCCAGGAGGAGTGCTCCCTCGCCATTTACCTCTCCGGCTTCCAGCAAGCTGTGATAGGGTTAGGGACGGTGGTGATGATGCCAGT
GATTGGTAATTTGTCGGACAAGTATGGACGCAAGGCTTTGCTCACTTTCCCTTTGACACTCTCCATTTTCCCTCTTGTAATATTGGCATACAGCAGATCA
ACAGAGTACTTCTATGCATACTACATTCTCAGAACACTCACTGCCATGCTCTCTGATGGCAGCACTAACTGCCTCGCCCTTGCTTATGTGGCGGACAACG
TCTCTGAATCGAAAAGGACAGCAGCATTCGGGATCCTGGCTGGTGTTGGATCGGCTGCTTTTGTGTGTGGAACCTTGGCCGCTCGTTTCCTCTCCACTGG
TTTGGCTTTCCAGGTTGCTGCAGCTTTGTCCATGGTTGCAGCTGTGTACATGAGGATCTTCCTCAAGGACGACAAGCTTTCCGAAACCGGAGATCATTTG
ACTCAGCCGATCTTGAAAAAAGTGTCGTCTGAAGAAGACGGTGAACAAAGCCGTGTTCTTCCTAACAAGGTGGCCTTCAAGACATTTCCATCTGTTGGCG
ACCTTGTCTCCTTACTTAATATCAGTGTGACATTTACTCAGGCAGCCATTGTCACATTCTTCCAGAGTCTTGCTGATGGTGGAACTCAAGCTGCCATGTT
GTACTACTTGAAAGCAAGGTTTCACTTCAGCAAGAACCAGTATGCTGATCTGATGCTGATTGCTAGTCTTACAGGAATGGTGTCTCAGAAATCTTTGCGA
ATGGCGATGATGCAGCTGATCCTCATGCCGATATTGGCGCCATTTTTAGCAGAACGGAAGCTACTGTCAGTAGGCCTGTTAATAGGGTGTGCAAATACTC
TTGTTCTCAGCATTGCATGGTCCGACTGGGTCCCATACGCAACAGCTGTATTTGCTGCAGTTGCAGTTCTTGCAACTCCTTGTTTACGTAGCATCGCCTC
GAAGCAAGTTGGATCAAGAGACCAGGGAAAAGCTCAAGGATGCCTTTCAGGGATAAGTTCCATTGGCAGCATCATTTCTCCACTAATCTTTAGCCCTTTG
ACAGCTATGTTTCTTTCTGAACAACCACCTTTTGACTTCCCTGGATTCAGCGTTTTGTGCATCGGATTCATGACGATGATTGCCTTGATCCAGAGCCTTA
TGATAAAGGCTGACCATCATCCGGTTTCGACTGACATGAGTAGTGACTCTCCAGAGGCCATAGTTGTAGTCTCTTGA
AA sequence
>Lus10025087 pacid=23167880 polypeptide=Lus10025087 locus=Lus10025087.g ID=Lus10025087.BGIv1.0 annot-version=v1.0
MEKLMELGHLLMTVFLSASSTIMVFPAITDVTMAALCPGQEECSLAIYLSGFQQAVIGLGTVVMMPVIGNLSDKYGRKALLTFPLTLSIFPLVILAYSRS
TEYFYAYYILRTLTAMLSDGSTNCLALAYVADNVSESKRTAAFGILAGVGSAAFVCGTLAARFLSTGLAFQVAAALSMVAAVYMRIFLKDDKLSETGDHL
TQPILKKVSSEEDGEQSRVLPNKVAFKTFPSVGDLVSLLNISVTFTQAAIVTFFQSLADGGTQAAMLYYLKARFHFSKNQYADLMLIASLTGMVSQKSLR
MAMMQLILMPILAPFLAERKLLSVGLLIGCANTLVLSIAWSDWVPYATAVFAAVAVLATPCLRSIASKQVGSRDQGKAQGCLSGISSIGSIISPLIFSPL
TAMFLSEQPPFDFPGFSVLCIGFMTMIALIQSLMIKADHHPVSTDMSSDSPEAIVVVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16980 Major facilitator superfamily ... Lus10025087
[exp]
0 1
AT2G38330 MATE efflux family protein (.1... Lus10002856
[exp]
1.7 0.9039
AT3G19340 Protein of unknown function (D... Lus10031975
[exp]
5.7 0.8739
AT2G38670 PECT1 phosphorylethanolamine cytidyl... Lus10027604
[exp]
7.4 0.8069
AT5G55050 GDSL-like Lipase/Acylhydrolase... Lus10040065
[exp]
7.7 0.8571
AT1G71810 Protein kinase superfamily pro... Lus10017924
[exp]
10.2 0.8641
AT1G27180 disease resistance protein (TI... Lus10004727
[exp]
12.0 0.8636
AT1G23820 SPDS1 spermidine synthase 1 (.1.2) Lus10012996
[exp]
15.6 0.8485
AT1G74840 MYB Homeodomain-like superfamily p... Lus10024984
[exp]
15.6 0.7933
AT5G62620 Galactosyltransferase family p... Lus10037238
[exp]
15.7 0.8449
AT2G30990 Protein of unknown function (D... Lus10029830
[exp]
15.7 0.8677

Lus10025087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.