Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35140 563 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G38480 524 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G45620 412 / 1e-140 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G10940 141 / 5e-36 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 65 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 54 / 1e-07 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G14530 54 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 51 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G49430 49 / 6e-06 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023993 [exp] 959 / 0 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034751 [exp] 445 / 9e-152 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10033290 [exp] 437 / 1e-150 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040538 [exp] 87 / 2e-19 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 68 / 3e-12 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 65 / 3e-11 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040537 [exp] 61 / 1e-10 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10022847 [exp] 57 / 2e-08 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011916 [exp] 55 / 8e-08 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139000 [exp] 630 / 0 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G178700 [exp] 583 / 0 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G158300 [exp] 132 / 7e-33 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103132 [exp] 106 / 5e-26 AT5G10940 390 / 2e-132 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103066 [exp] 71 / 4e-14 AT5G10940 209 / 4e-64 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 62 / 3e-10 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G194100 [exp] 55 / 8e-08 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G019601 [exp] 53 / 3e-07 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019833 [exp] 52 / 5e-07 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G144400 [exp] 51 / 1e-06 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10025088 pacid=23167817 polypeptide=Lus10025088 locus=Lus10025088.g ID=Lus10025088.BGIv1.0 annot-version=v1.0 ATGGGGAAGAGAAACAGAAGCCACGCCAGCCTCGACGCTGCGGTGGTCGATGTTTGGCAGAGAGAGGTCGGCCAGCTCTCCGGCCGCCACTTCTCTCACC GTCTTGCTGCCTCCAAGGATCTTGTACTGCGGCTCGAGCTCTGCAGGAAACTAGAGAAGCATCTTGGCTGTGTTAATACTGTGAGCTTCAATGCTTGTGG TGACATTCTGGTGTCAGGTTCAGACGACAGACAGGTGGTTTTATGGAACTGGGAAAATGGTAGAATCAAGCTAGCTTTCCATTCAGGTCATCAGGGTAAT GTCTTTCAAGCAAAGATCATGCCTTACTCCGGTGATCGTAGCATTGTCACTTGTGCTGCTGATGGTCAGGTTCGACATGCTCAAATTCACGAGCATGGAG AAGTGGAAACCAAAATGCTTGCAAAACATCAAGGCCGAGCTCATAAGCTGGCCGTTGAGCCTGGAAGCCCTCATATATTTTACACTTGTGGCGAGGATGG ATTAGTTCAGCATTTTGATCTACGGACAAGGACTGCTACAGAACTCTTTAACTGTCCACCTCTTGAGGAGAGGGCAGCTTATATGCCGGTGGTTCATCTA AATGCTATTGCAATTGATCCGAGGAACCCTAATCTCTTTGCAGTTGCAGGGTCTGACGAATATACCCGACTCTATGATATCCGCAGGTATAAGTGGGATG CATCAGCTGATTTTAGTGACCCTGCAGACTACTTTTGCCCGTCTCATCTGATTGGTAATGACCAAGTTGGGATAACAGGTCTGGCTTTCTCTGACCAGAG TGAACTTCTTGTCACATACAATGATGAATTCATCTATCTTTTTGACCGGGACATGGGATTGGGACCCAATATCGAGAAGCCTTCTGAGGATTGCTATGAG AAACTTAATCCTCAGGTTTATAAAGGACACCGTAACTGCGAGACTGTGAAAGGTGTAAACTTCTTTGGGCCGAGATGTGAGTATGTTGTGAGTGGGTCTG ACTGTGGTCGGATTTTCATTTGGAAAAAGGAAGGTGGAGATTTGATACATGTCTTGGAAGCTGATAAGCATGTCGTGAACTGTATTGAACCTCATCCTCA TAGTACCGTACTAGCCAGCTGTGGAATCGAGCGCGACATAAAGATATTCACTCCAAAGGCCATCGAAAAAGCTACACTGCCTTCAAACATTGGACAGCTG ATACCAGGCGCTAGAGCTTCATTTCAAGAGGTGCTGTTGGAGCTGTTTACGCTGCGAGGGCTGCGAGGACGGCGAAGTAATTTGGCGAACATCAGTGAAG AGAGGTCAGCTCCTGCTAGTGAACTTATGGATCTTATAATGGCATTCAATACCAATGGTAATCCTTCTTCTTCAGATGATGGAGAGAACTCTACTAGTCA GGAAGACTTGTTTGCTTAA
AA sequence Show only first row Show all	>Lus10025088 pacid=23167817 polypeptide=Lus10025088 locus=Lus10025088.g ID=Lus10025088.BGIv1.0 annot-version=v1.0 MGKRNRSHASLDAAVVDVWQREVGQLSGRHFSHRLAASKDLVLRLELCRKLEKHLGCVNTVSFNACGDILVSGSDDRQVVLWNWENGRIKLAFHSGHQGN VFQAKIMPYSGDRSIVTCAADGQVRHAQIHEHGEVETKMLAKHQGRAHKLAVEPGSPHIFYTCGEDGLVQHFDLRTRTATELFNCPPLEERAAYMPVVHL NAIAIDPRNPNLFAVAGSDEYTRLYDIRRYKWDASADFSDPADYFCPSHLIGNDQVGITGLAFSDQSELLVTYNDEFIYLFDRDMGLGPNIEKPSEDCYE KLNPQVYKGHRNCETVKGVNFFGPRCEYVVSGSDCGRIFIWKKEGGDLIHVLEADKHVVNCIEPHPHSTVLASCGIERDIKIFTPKAIEKATLPSNIGQL IPGARASFQEVLLELFTLRGLRGRRSNLANISEERSAPASELMDLIMAFNTNGNPSSSDDGENSTSQEDLFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	0	1
AT5G06440			unknown protein		Lus10029362 [exp]	4.9	0.7171
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	6.0	0.7554
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	7.7	0.7446
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	13.0	0.6772
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	13.5	0.6972
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	14.5	0.6818
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	14.9	0.7501
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	15.4	0.6825
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	16.2	0.7259
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	18.7	0.7328

Compare expression of checked genes

Lus10025088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.