Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18310 478 / 3e-155 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023992 [exp] 1549 / 0 AT3G18310 518 / 4e-163 unknown protein Lus10027301 [exp] 240 / 6e-73 AT3G18310 100 / 3e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041300 [exp] 761 / 0 AT3G18310 593 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025089 pacid=23167750 polypeptide=Lus10025089 locus=Lus10025089.g ID=Lus10025089.BGIv1.0 annot-version=v1.0 ATGAACTCGTCGGAGGAGTGGAAATCTTTCTTCCCCGTCGGCGACGTCTTCGGAGCGCCTTTACTCCTATCAAGCCCTGACATTCTTGGTCCTCTCTGTT TCAACCCAAACCCCAATTCCTTAACTTGTCTGTTCGATTCACATAGCGATCTTTCCCCTCCGATTCTCAACCCTCCTTCCCAGCTCTCCATCTCCCGCTT CCTCCAAACTCACGATTCCTACATTCCTCTCTCTGCCGTCTCCGACATATCCTTCAAATACTCCGGCTGCGACGAACAAGACTCTGCTTCCTTCTGGCTC TCCCGCAATCGGATTCAGCTCCTTCATGCTCAAAACTCTGTTTTCGTCTTCTTCCCCACCGGCTCCAACTTCGACCAGATAGGCTTCTTAGTGCTGGAGG CCGACGGCGGCGGTGGGTTGAAAAGTTCTGTAGGCGGGGTTTTCACTGCCAATAAGTGTCTGAATCAGCGGGTTAGAGGGATTTTGGTGAATCCAGCTTC GGATTCCAGCTGGCTTACAGGTGAATCTTCTTCTGATGACGATGATGCTATTATAGGGCATTTATTGGCTTACTGTATGTACTCCGTACATTGGTTTTGC GTTAGAAATGATGGAGGTACTAGTGAAAAGAAAAAGAAGCCTTCTTTAGTATGTATGGGCAGCAGAAGTTTCAAGAGCTCTGCCGTTGTGAGTGCTTGTT GGAGTCCGCATTTACTGGAAGAGTGCATTGTTCTGTTGGAGGATGGCTCTTTGTTTCTGTTTAATTTGGATTCATCGTCACCCTCGTATAGTTCGAGCTT GTGTTTTGGAGGGACGCTTCTGAAAGTGTCGTGGGATGATGAATCGAAGAAGAGTTTTAAATGGTTGGGATGTGAGTTCAGTTGGCATCCTAGAACACTG ATCGTTGCACGCTCTGATGCTGCTTTCTTGGTTGATTGGCAGTTTGATGATCATAAGGTGACTTGTTTAGCGAAGCTCGATATGTTCGGTCCATATGGGA GGACACGATTCCAAGCTTTCTCCAAGGCAGTTTCCAGTAATTTCCACTTCATATTGGTATCTAGTAGCTCGTTAGTTCTTTGTGATGTTCGAAGACCTCT ATCTCCGTTGTTGATATGGACACATGGTCTTGACAGGCCATGCTATGTAGATACCTTTAGGCTGTCTGACTTAAGGTCGAATTTGAAAGACGATACACAG GAGTGGGCGAATAAATCGGGGTTCGCCATTATACTGGGATCGTTCTTGAATTCTGAGTTCAGCATCTTTTGTTATGGACCGCCCTTGCCTGGTCCATACA AGTCGGTTGGTTCGAAAATTTCTCAGCTTTCCAAGTCGGTGTATGCTTGGGGGCTCCCTTCGTATCTCAACCTGCAGAATGCTGACTGTGTTTGCGGTAG CTGTCTTGTGAGAGAAGAGTTTGCGAAAGATACTCTTCCTGAATGGCTTGACTGGAATCAGAAGAGAGATTTAGTTCTTGGCTTCGGCATTTTGAGTGGA GATATGTATGGCTTTTCGACTGGGGAATTCGATGGATTCGGTCTTATTAGGTTGATGTCTTCCGGGAAGCTGGAGTTACAGCAGTACTCCGCTTCTTGGG AGTTGTTTAGAACGTTGGGAGATCATACTGATCGTCCATTGTTGAGTGGTGGGAATAATTTGTATACTGCTCTGGAGGATGAGAAGTATAAATTCCCCAG AAAGTTTAAATATTTGGACTTGGATTATCTCTCTGCATACTTGAATGGTGATCTTTCCAGGATCTTGGATTTAAAGTTACGAAATTCCTGCACGAGTCCT ATGGAAGAGGGGCAATCTTTTGGCTTGGACATCCATGAAGCATTGTGCGAGAAGTTGAAGAGCAGCGGGCTGAATCGGTTTCGAGCTTCTCCAATTAACA ATCTTGTTCTTAAGGATGTGAACCTTCCAGCGAGCATTCAAGATATTGCCTTGAGTAAAATATGGGCGGGTTTGCCAATGGAACTTTTACAGCTGGCATT CTCTAGCTACTCTGAACTCCTTGAAGTGCAGTTAGACCAAAAGGAAATAGCATTGGAATTTTCAGCTGTCCCCGATCTTCCCCAGTTGCCACCATTCCCC TTGAAGATGCCTTCCCATCGTAGCAATAAATGGTCGAATTCGGTGCAGCGTAGTGGTGATACTCTCGTGGGTCCGGTTCTTCCTCTACCGGTCTTGATTA CACTTCACGAGCTCCGAAATGGATCCCAAAATTCCGAGGAGGAAGCTACGGAGTTCTCTGCAGAGGCAGAAATTGATATGCAATGCAATGAAGTGATGGA GATGGCAAAGGAAGTGGCGCTTGGAGGAGATTTGATGATGGCTAAGTTTGGTGATGACGAAACAGCAGTGTCCCTTGCCAGTCAGAAAGATGCTATCTTG GTCGACTCTGAACAGCCGAAATCTTTCTTGATGTATCATCCAGCAGCATTACAGGGACGTGGAGGAAATGGCAACAACAGTTACTCGAGGGATGAGAGCG CTAGTACCTTCATTACAAGACTAGAAAGCAAAGAAGCCAGTACTGATGACAAGCAGCAAGACCCTACCAGGCCAATCTTCAAAGGTTTATGTCCAATCGA CTTGAAATTCCCTGATGATCTTGAGGAGTTCCATTCCAAGGAACATTTAGCATACAAAATGTTGAAAAGAGTTGTGGTAAAGTGGCAGGAACAGCTCAAA CCTTACCAAGATTTTTTGAATATACCCAGTAATGCTTAA
AA sequence Show only first row Show all	>Lus10025089 pacid=23167750 polypeptide=Lus10025089 locus=Lus10025089.g ID=Lus10025089.BGIv1.0 annot-version=v1.0 MNSSEEWKSFFPVGDVFGAPLLLSSPDILGPLCFNPNPNSLTCLFDSHSDLSPPILNPPSQLSISRFLQTHDSYIPLSAVSDISFKYSGCDEQDSASFWL SRNRIQLLHAQNSVFVFFPTGSNFDQIGFLVLEADGGGGLKSSVGGVFTANKCLNQRVRGILVNPASDSSWLTGESSSDDDDAIIGHLLAYCMYSVHWFC VRNDGGTSEKKKKPSLVCMGSRSFKSSAVVSACWSPHLLEECIVLLEDGSLFLFNLDSSSPSYSSSLCFGGTLLKVSWDDESKKSFKWLGCEFSWHPRTL IVARSDAAFLVDWQFDDHKVTCLAKLDMFGPYGRTRFQAFSKAVSSNFHFILVSSSSLVLCDVRRPLSPLLIWTHGLDRPCYVDTFRLSDLRSNLKDDTQ EWANKSGFAIILGSFLNSEFSIFCYGPPLPGPYKSVGSKISQLSKSVYAWGLPSYLNLQNADCVCGSCLVREEFAKDTLPEWLDWNQKRDLVLGFGILSG DMYGFSTGEFDGFGLIRLMSSGKLELQQYSASWELFRTLGDHTDRPLLSGGNNLYTALEDEKYKFPRKFKYLDLDYLSAYLNGDLSRILDLKLRNSCTSP MEEGQSFGLDIHEALCEKLKSSGLNRFRASPINNLVLKDVNLPASIQDIALSKIWAGLPMELLQLAFSSYSELLEVQLDQKEIALEFSAVPDLPQLPPFP LKMPSHRSNKWSNSVQRSGDTLVGPVLPLPVLITLHELRNGSQNSEEEATEFSAEAEIDMQCNEVMEMAKEVALGGDLMMAKFGDDETAVSLASQKDAIL VDSEQPKSFLMYHPAALQGRGGNGNNSYSRDESASTFITRLESKEASTDDKQQDPTRPIFKGLCPIDLKFPDDLEEFHSKEHLAYKMLKRVVVKWQEQLK PYQDFLNIPSNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18310			unknown protein		Lus10025089 [exp]	0	1
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	1.7	0.8242
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	9.2	0.8219
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	12.6	0.8071
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	14.0	0.8127
AT3G42170			BED zinc finger ;hAT family di...		Lus10005558 [exp]	15.8	0.7056
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	16.7	0.7937
AT4G22720			Actin-like ATPase superfamily ...		Lus10029108 [exp]	19.4	0.7566
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	19.6	0.7931
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	21.7	0.7946
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	23.0	0.7882

Compare expression of checked genes

Lus10025089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.