Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17033 415 / 3e-143 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G74750 67 / 9e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 66 / 2e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT2G32630 61 / 7e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G17140 57 / 9e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28460 57 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28370 57 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61520 57 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G26790 56 / 2e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40400 55 / 4e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023992 [exp] 445 / 6e-144 AT3G18310 518 / 4e-163 unknown protein Lus10033110 [exp] 71 / 6e-13 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10018019 [exp] 66 / 2e-11 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003657 [exp] 65 / 4e-11 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 64 / 6e-11 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10042016 [exp] 63 / 1e-10 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039056 [exp] 61 / 7e-10 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 61 / 8e-10 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012268 [exp] 59 / 4e-09 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139300 [exp] 460 / 3e-161 AT2G17033 475 / 7e-165 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.015G066400 [exp] 62 / 3e-10 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.014G090400 [exp] 58 / 4e-09 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 58 / 5e-09 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G250200 [exp] 57 / 1e-08 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G123600 [exp] 57 / 1e-08 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G205600 [exp] 57 / 1e-08 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 56 / 3e-08 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G081700 [exp] 54 / 8e-08 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.015G105400 [exp] 54 / 1e-07 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01713 [flax] [poplar] Smr Smr domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025090 pacid=23167741 polypeptide=Lus10025090 locus=Lus10025090.g ID=Lus10025090.BGIv1.0 annot-version=v1.0 ATGATTACTGAAGCTTCATGGTTTGAATGGAACCCAAAGCTGACGGCAAATCTGGCCGCATTTCTTGACAAACGAGGACAATGCAACGAATCAGAAGTTC TGATTACCGAAACAGTCGCCAAATTACAGAGCCGGGAAAGGGAGACTGCTCTGTTTTACTGTGAGTTAGTTGGTTGCCATTCGAAGCACGATTCAGTTCG AGGATTTGACTTCTCTTTAGCTCGATTGAGAGAGCTCGTTGACAGCTCGAGCTCTGTTTATGTGAAGAAGCAAGGCTACAAGGCAATGGCAAGCGGGTTA GCTGAAATGGGCAGAATGAAAGAAGCAGAGGATGTGATTGCTGAGATGACAGACAAAGGAATCAAACCTTCGCAGTTTGAACTCAGGTGCCTTCTTTACG GATACGGAAGATCCGGACTGTTTTCAGATATGCAGAGGATCGTTGAGAAGATGGAGAAGCAAGGGTTCGAAATCGACACAGTTGCTTCAAACATGATTGT TTCGTCTTACGGAGCTCACAATGCACTTCCCGAGATTGTCACCTGGCTGAGGAAAATGAAAGCTTCGCCAATTCCTTATTCGATCAGGACTTGGAATTCG GCATTGAACTCGTGTCCCACGATCATGTTAATGCTGCAGAACTCTTCTGGCGGCTGCCCTGTTTCTATCGAGGAGTTGGTGAAGAATGTGACTGAAACAG AGGCAATGCTGGTTAAGGAGCTGGTGGGATCAGATGTTCTGAACGATGATGCAATGAGATGGGATGCTTCAGAAGCTAAGCTGGATTTGCATGGAATGCA CTTGAGCACTGCTTATGTCATGATCCTGCAGTGGATGGAAGAAATGAGACACAGATTTCAGGCTGGGAGTGCAGTGATCCCAGGGGAGGTGGTGGTGGTT TGTGGATCAGGGAAACATAGCAGTGTTAGAGGGGAATCACCAGTAAAACGGCTGGTTAAAGATGTTGTCGCGAGGACTGGAATCCCATTGAGGAGAGACA GGAAGAACACTGGTTGTTTTGTTGCTAAAGGGAAAGCAGTCAAGGAATGGATAATGTTAATGAGCAGAGAAACGATCTAA
AA sequence Show only first row Show all	>Lus10025090 pacid=23167741 polypeptide=Lus10025090 locus=Lus10025090.g ID=Lus10025090.BGIv1.0 annot-version=v1.0 MITEASWFEWNPKLTANLAAFLDKRGQCNESEVLITETVAKLQSRERETALFYCELVGCHSKHDSVRGFDFSLARLRELVDSSSSVYVKKQGYKAMASGL AEMGRMKEAEDVIAEMTDKGIKPSQFELRCLLYGYGRSGLFSDMQRIVEKMEKQGFEIDTVASNMIVSSYGAHNALPEIVTWLRKMKASPIPYSIRTWNS ALNSCPTIMLMLQNSSGGCPVSIEELVKNVTETEAMLVKELVGSDVLNDDAMRWDASEAKLDLHGMHLSTAYVMILQWMEEMRHRFQAGSAVIPGEVVVV CGSGKHSSVRGESPVKRLVKDVVARTGIPLRRDRKNTGCFVAKGKAVKEWIMLMSRETI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	1.0	0.8439
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10010446 [exp]	3.2	0.7242
AT4G39470			Tetratricopeptide repeat (TPR)...		Lus10035707 [exp]	3.5	0.7389
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	3.7	0.7748
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	7.3	0.7556
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10014365 [exp]	9.8	0.7350
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	10.6	0.7499
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10030125 [exp]	11.7	0.6961
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	13.5	0.7162
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	18.0	0.7440

Compare expression of checked genes

Lus10025090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.