Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 757 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 733 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT1G78610 733 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 722 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17000 714 / 0 Mechanosensitive ion channel family protein (.1) AT3G14810 697 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17700 671 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT2G17010 478 / 5e-151 Mechanosensitive ion channel family protein (.1) AT5G12080 426 / 4e-132 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 392 / 1e-119 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023990 [exp] 1195 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023989 [exp] 1130 / 0 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10022654 [exp] 1018 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10012517 [exp] 928 / 0 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 832 / 0 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10038148 [exp] 767 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 766 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10041845 [exp] 713 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10005556 [exp] 686 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178900 [exp] 877 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.009G139400 [exp] 877 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 854 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.001G384100 [exp] 793 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 775 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G106200 [exp] 725 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 720 / 0 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 703 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 658 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 651 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10025092 pacid=23167805 polypeptide=Lus10025092 locus=Lus10025092.g ID=Lus10025092.BGIv1.0 annot-version=v1.0 ATGGTGGAGATGATTACGACGGTAACGACAGAGGAGGATAAAAGAAGCGATAGCTGCGGGAGCCTAGCAGTGCGCGAAGAGAGGCCTTCGTTTCCGCAGG GGAGGCAGCATAGGAAAAAGGTGGAGGTTTACGATGAGGTTCTCCGTCGGCTCAAGGAATCAGACAATGAAGAGGCAGATCGTGCTGGCTTCGACGATGA GCTGTGGTCTCACTTCAGTCGCCTCCCTGTTCGATTCCACATGCTCATGGATGATTTGGTTCCGATGGACATGGGGAATCTGTCTATTAGCGAATATGCA TTGGATGTGAATGTGGAAAGAGCTGAGGATGTTCTGATGCACAAAAGGCTACTGCATTTGGCTCACGATCCGGCTAATCGGCCGGTGATTGAAGTCCGGC TTGTACAGGTTCCTCCTAGTTCTGATGGAAAGTGGGCTGAGTCTAATTTTCCAGATTCTCCTAGGAAAGAATCTGAACGAAGTAGTCGACTGAGCATACA TCCACCCCCGACGTTTGGCTCATCTCCTAATCTTGAAGCGCTTGCACTCGAAGAACATGATTCGGATGATCAGAATGGTGATCATTCTGTACATGCCAAT TCAAAATTTTTACGGGCCATGCATGAAATTACTTTTTCAGCGGAAGACAAGCCAAAACTTCTAAGTCAGCTGACTTCCATGCTGGCGGATGTCGGATTAA ACATTCAAGAAGCACATGCCTTTTCAACAGTAGATCGTTACTCATTGGATGTCTTTGTTGTTGATGGGTGGCCATATGAGGAAACAGAGCAGTTGAGAAC TGCTTTGATAAAGGAAGCATCAGAGGTTGAGAGGCAGACTGGGGCAGACCATCACTCACTACCTTTTACAAAGAAGCGTGAGCCAATTCGAATCAAACAT GATCCTGATTCTGTGACAATACCTAATGATGGGACTGATGTCTGGGAAATTGATCTTAAACGGCTAAAGTTCGACAGCATGGTGGCATCTGGATCATATG GGGATCTGTACAAAGGTACTTACTGTAGCCAGGAAATTGCCATCAAAGTACTAAAGTCTGAACGAGTAAATACAGATATGCAGAAAGAGTTTGCTCAGGA AGTTTTCATAATGAGGAAAGTTCGGCATAAGAATGTTGTACAGTTCATAGGTGCATGCACCAAACCTCCAAGTTTGTGTATAGTAACAGAGTTCATGTCC GGTGGAAGTGTGTATGACTACCTGCATAAACACAAGGGAGTCTTCAAGCTTCCTTCCTTACTAAAAGTCGCCATAGATGTCTCCAAAGGAATGAACTACT TGCATCAGAATAACATTATTCATAGAGATTTGAAGGCTGCAAATATTCTCATGGATGAAAATGAGGTGGTTAAGGTTGCAGATTTTGGTGTCGCCAGAGT GAAAGCTCAAACTGGAGTGATGACAGCTGAAACTGGGACCTATAGATGGATGGCTCCCGAGGTCATTGAGCACAAGCCATACGACCATAAAGCCGATGTC TTCAGTTTTGGAATTGTACTGTGGGAGCTATTGACCGGAAAGCTTCCGTACGAGTACTTAACACCGCTTCAGGCAGCAGTTGGCGTGGTCCAGAAGGGAT TGCGGCCTACGATACCAAAACACACAAATCCAAAACTGACTGAGCTCCTGGAGAAATGCTGGCAACAGGATCCATCCTTGAGACCGGAGTTCTCCGAAAT TATAGAGATCCTTCAACACACCGCGAAAGAGGTGGGAGACGATCCGGGCAATGGACGGAAGGAGAAGTTGCACGGAGGGTTCCTGCCAACTCATCCATTT GTTTCCGGTCCCAATGGTTGGGTTCCGTGCGAACTGCACCTTGCCGAACCAAGCACGTCAGGCGTCTCTCCTCTTCCTCCGCCCAACGCGGCGGCGAAGA TTCCGATCATAACCACCACCACCACCACGAACACCTCCCAATCCTTGACGCGGAATTTTAATAATGACAACAGCAGCAATTACCCTGCCTCTCCGTTAAG CCGACGCTCCTCTGTCCGTGTCTCGTTTGAGCCGTCCGTCTCCGGAGTATGCTCAGACGCCGCTGCCGCCGCCGCGGCTGATTCTCTTCGGTGGCGTAGC AAGGATATTCACCAGGAAACGGTTCCTTCATCTTCGGTGCCGCATAGTAGGGACGAAGTTCTCCGGTGTACATCGAACAATTCGTTCCGCAAACAGGCCA GCACGCTCTCGAGGCTGAAGACGAAATCACGGCTCCTAGACCCGCCGGAGGACGAATTGCAGAGGATGTCAGGGATTATAGCGAAATCAGGGATGATGTA TAGGTCAGGAATGATGAGCAAAACTGGAGGAGAAGAAGATGACGACGATGATTTGGAATTGGAGGATTTTCCAGAAGATATCAAGAAGTCGAAACTGAAC ATATGGACTTTCCTACAGTGGTTCGTTTTGATTACGATTATATTCGCTCTTATCTACGGCTTTATAAACCCTTGGTTGAAGAAGAAGAGGATAGCTCATC TCAAGCTATGGAAATGGGAAGTTCTGTTCTTGGTCCTGATATGTGGGAAGCTTGTTTCGGGTTGGGGAATTCGGATTCTTGTATTCTGTGTTGAAAGGAA CTTTCTTTTACGGAAGAGGGTTCTGTATTTTGTATACGGATTGAAGAACGGTGTTCAGAATTGCTTGTGGCTGGGGCTAGTTCTTCTCGCTTGGTTGTTG TTGTTTGACAAGAGAGTTGAACAGGAAGCCAAAGGCAGAGTGAAAGTTCTCAAGTATCTGACAAAGGTGTTGATTTGTTGCTTAGTGGCCAATTTCATAT GGCTGCTGAAGACATTGCTGGTGAAAGTTCTTGCTTCTTCGTTCCACGTTAGTACCTACTTTGACAGGATTCAGGAGGCTCTTTTCAACCAGTATGTGAT CGAGACTTTATCGGGCCCTCCGTTAATTGAGCAGTTGAAGACGAGGGATGAGATTGAGAGGACGGCTGCAGAGGTTGCTAAGCTGCAGAATGCAGGGGCT AATGTTACTCCTGATTTGAGAGAGACTGTGTTCTCTTCTGCTGCTGGGAAGGTTATTGGGAGTGGGAAGCTGATTGGGAATAGTTTCAAAGGGAGGAGTA ATTCTTCGTCGGTTGAGAAGAAGGGGGTTGGCGGGGATGATTCGAAGAACACGATTACCATTGATCATTTGCATCAGCTTAATACCAAGAACGTCTCTGC TTGGAATATGAAGCGGCTGATGAAGATTGTGAGACATGGCTCGCTTTCAACCCTTGATGAACAGATTCTCCATGGTGCGACTAACCATGAGCTTGAAGAT GAGTCGAGGAAGATTAGAAGTGAGTACGAGGCTAAAGCTGCTGCCAGGAAAATCTTCTACAATGTGGCTGGTCAGAATTCAAGGTACATTTATCTAGAGG ATATAATGAGGTTCTTGAGAGAGGAAGAAGCGTTGAAAACTATGAGTTTCTTTGAAGGAGCATCAGAACATTGTCGAATTAGCAAATCCTCTCTCAAGAA TTGGGTGGTAAATGCGTTCAGGGAAAGGAGGGCACTTGCTCTGACGCTGAACGACACAAAGACAGCAGTGAACAAGCTCCATCACATGGTGAACGTAATA GTAGGTGTCATCATCGTTATACTCTCTTTGCTCCTCCTCGGGATTGCTCCCAGTAGCTTCTTCGTACTCCTCGGTTCACAGATTGTTGTCGTATCGTTCA TCTTCGGAAACACCTGCAAGACGCTGTTTGAGTCCCTCATATTCTTGTTCATAGTCCATCCTTACGATGTCGGCGACCGGTGCGAGATTGATGAAGTTCA GTTGGTGGTGGAGGAAATGAACATATTGACGACGGTGTTCTTGAGGGGAGACAATCAGAAGGTGGTGTACCATAACAACATACTCGCCACCAAGTCCATC GGCAACTTCTACAGGAGTCCTGACATGGGTGACGCCATCGAGTTCCTCATCCATGTCACCACTCCCGCCGACAAGGTTGCCGTCATGAAACAGAAAATCA TCAGCTACATTGAGGGGAAGAAGGAGCACTGGTACCCGAGTCCAATGGTGATAATGAAAGACGTGGAAGGTCTGACGGCGATCAAAATGGCGGTATGGTT CAGGCACAGGATGAACCACCAAGACATGGGAGAGAAGTTCTCGAGACGAGCTTTGCTGGTCGAAGAGATAGTCAAGATCTTCAAAGAACTCGATATTCAG TATCGACTGTACCCCATCGATATCAACATCAGGCAAACCCCTTCTTCCTTGCCCCCTTTGCCCTACTCGGTCAACCATTAA
AA sequence Show only first row Show all	>Lus10025092 pacid=23167805 polypeptide=Lus10025092 locus=Lus10025092.g ID=Lus10025092.BGIv1.0 annot-version=v1.0 MVEMITTVTTEEDKRSDSCGSLAVREERPSFPQGRQHRKKVEVYDEVLRRLKESDNEEADRAGFDDELWSHFSRLPVRFHMLMDDLVPMDMGNLSISEYA LDVNVERAEDVLMHKRLLHLAHDPANRPVIEVRLVQVPPSSDGKWAESNFPDSPRKESERSSRLSIHPPPTFGSSPNLEALALEEHDSDDQNGDHSVHAN SKFLRAMHEITFSAEDKPKLLSQLTSMLADVGLNIQEAHAFSTVDRYSLDVFVVDGWPYEETEQLRTALIKEASEVERQTGADHHSLPFTKKREPIRIKH DPDSVTIPNDGTDVWEIDLKRLKFDSMVASGSYGDLYKGTYCSQEIAIKVLKSERVNTDMQKEFAQEVFIMRKVRHKNVVQFIGACTKPPSLCIVTEFMS GGSVYDYLHKHKGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANILMDENEVVKVADFGVARVKAQTGVMTAETGTYRWMAPEVIEHKPYDHKADV FSFGIVLWELLTGKLPYEYLTPLQAAVGVVQKGLRPTIPKHTNPKLTELLEKCWQQDPSLRPEFSEIIEILQHTAKEVGDDPGNGRKEKLHGGFLPTHPF VSGPNGWVPCELHLAEPSTSGVSPLPPPNAAAKIPIITTTTTTNTSQSLTRNFNNDNSSNYPASPLSRRSSVRVSFEPSVSGVCSDAAAAAAADSLRWRS KDIHQETVPSSSVPHSRDEVLRCTSNNSFRKQASTLSRLKTKSRLLDPPEDELQRMSGIIAKSGMMYRSGMMSKTGGEEDDDDDLELEDFPEDIKKSKLN IWTFLQWFVLITIIFALIYGFINPWLKKKRIAHLKLWKWEVLFLVLICGKLVSGWGIRILVFCVERNFLLRKRVLYFVYGLKNGVQNCLWLGLVLLAWLL LFDKRVEQEAKGRVKVLKYLTKVLICCLVANFIWLLKTLLVKVLASSFHVSTYFDRIQEALFNQYVIETLSGPPLIEQLKTRDEIERTAAEVAKLQNAGA NVTPDLRETVFSSAAGKVIGSGKLIGNSFKGRSNSSSVEKKGVGGDDSKNTITIDHLHQLNTKNVSAWNMKRLMKIVRHGSLSTLDEQILHGATNHELED ESRKIRSEYEAKAAARKIFYNVAGQNSRYIYLEDIMRFLREEEALKTMSFFEGASEHCRISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHHMVNVI VGVIIVILSLLLLGIAPSSFFVLLGSQIVVVSFIFGNTCKTLFESLIFLFIVHPYDVGDRCEIDEVQLVVEEMNILTTVFLRGDNQKVVYHNNILATKSI GNFYRSPDMGDAIEFLIHVTTPADKVAVMKQKIISYIEGKKEHWYPSPMVIMKDVEGLTAIKMAVWFRHRMNHQDMGEKFSRRALLVEEIVKIFKELDIQ YRLYPIDINIRQTPSSLPPLPYSVNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10025092 [exp]	0	1
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	2.8	0.9084
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	3.3	0.9362
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	3.6	0.8845
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030635 [exp]	7.7	0.8923
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	9.0	0.9040
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	9.5	0.8647
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	10.0	0.9026
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	11.8	0.8998
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	13.2	0.9009
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	14.7	0.8575

Compare expression of checked genes

Lus10025092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.