Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17020 186 / 9e-56 F-box/RNI-like superfamily protein (.1) AT1G55590 75 / 9e-16 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023988 [exp] 239 / 2e-76 AT2G17020 519 / 3e-178 F-box/RNI-like superfamily protein (.1) Lus10012518 [exp] 151 / 9e-43 AT2G17020 548 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10022652 [exp] 100 / 1e-26 AT2G17020 102 / 1e-25 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179571 [exp] 240 / 5e-76 AT2G17020 665 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.009G139500 [exp] 239 / 1e-75 AT2G17020 638 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G169800 [exp] 70 / 5e-14 AT1G55590 617 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025093 pacid=23167848 polypeptide=Lus10025093 locus=Lus10025093.g ID=Lus10025093.BGIv1.0 annot-version=v1.0 ATGTCACTATCTGTAAGAGGCTGCAAGAGACTTACCGATAGATGCATCTCGGCTCTATTCGAAGGCACTTCGAACCTGGAGTTGCAGGAGCTAGATCTTT CGAACATCCCCAACCTCACTGATGAGGGAATCCTCTCGCTCGCCAGAAGTCGAGTTCTGGTCTCCGAACTACGTCTTCGACAATGCCCACTCATCGGCGA CACATCGGTCATGGCATTGGCTTCGATGCAGGTGAATGAAGACCAGCGGCACGGTAACTGTCTGAGGTTGTTGGATCTATACAACTGTGGTGGCATCACT CAGCTTGCGTTCAGGTGGTTAAAGAACCCTTATTTCCCTCGATTAAGGTGGCTTGGGATTGCAGGGAGTATGAATCGAGACATCGTGGATGCTTTAGCAA GGAACCGAAGGTTCCTCCACGTTGCGCTCCACGGCGAGGAGATAGGGCCGGAGCAGTGGGACAACATCGACGGGGTTTACATGCACGAGTACGATGACAT GGACGAACTGGAGGAGTGGCTTCTTGGAGGCGGCGAGTTTGACGATATTGACATGGTTGATGCTGACAACGCTGCGGAGCTGCTGGCTTAG
AA sequence Show only first row Show all	>Lus10025093 pacid=23167848 polypeptide=Lus10025093 locus=Lus10025093.g ID=Lus10025093.BGIv1.0 annot-version=v1.0 MSLSVRGCKRLTDRCISALFEGTSNLELQELDLSNIPNLTDEGILSLARSRVLVSELRLRQCPLIGDTSVMALASMQVNEDQRHGNCLRLLDLYNCGGIT QLAFRWLKNPYFPRLRWLGIAGSMNRDIVDALARNRRFLHVALHGEEIGPEQWDNIDGVYMHEYDDMDELEEWLLGGGEFDDIDMVDADNAAELLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	0	1
AT5G66930			unknown protein		Lus10019643 [exp]	4.0	0.9476
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	4.2	0.9345
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	4.9	0.9436
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	5.5	0.9447
AT2G24550			unknown protein		Lus10026939 [exp]	6.3	0.9453
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	7.1	0.9425
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	8.2	0.9264
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	8.8	0.9381
AT2G39950			unknown protein		Lus10040223 [exp]	8.9	0.9341
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	9.9	0.9300

Compare expression of checked genes

Lus10025093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.