Plant FIBer expression Database

Lus10025094 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17020 145 / 4e-41 F-box/RNI-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023988
[exp]
254 / 6e-83 AT2G17020 519 / 3e-178 F-box/RNI-like superfamily protein (.1)
Lus10012518
[exp]
171 / 1e-50 AT2G17020 548 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G139500
[exp]
180 / 3e-54 AT2G17020 638 / 0.0 F-box/RNI-like superfamily protein (.1)
Potri.004G179571
[exp]
177 / 7e-53 AT2G17020 665 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Lus10025094 pacid=23167753 polypeptide=Lus10025094 locus=Lus10025094.g ID=Lus10025094.BGIv1.0 annot-version=v1.0
ATGGCGTCCACCGGCGAGGGGGGCGGAGCAAACGAAGCAGAAGGGGAGAGATTGGATCAGATGCCGGCAGCGCTCCTCTGCACAATAATGTCGAAGCTCG
ACGTGGGTTCCATTTGCTCCATCGCCTCAACTTGCAGGGCTTTCAGAGCATCCGCTTCTCATCTCTTTGGTTTCATACCAAACTTCCACCTCCTCCGCAG
AAGCTTGAAGCTTGACTGCGAGCGGCTAGATGATGCAGCCATCAGCTTTGTAGCTCAGCCTTCGTTGCAGGAGTTGTGTGTGCATAACTGCACAGATTTC
AGTGGGAAGTTGCTGTCTGAGATTGGTGGGAAGTGTCCAGATTTGAGGTGTCTATACTTGGGTTCAGTGGCTGAGAAAAGAGGCCGAGCCATTCATATAT
CTGATTTGGAGGACTTACTCAGTGGTTGCAGGCAGTTGGAAGTAAGGCTTGGTTGA
AA sequence
>Lus10025094 pacid=23167753 polypeptide=Lus10025094 locus=Lus10025094.g ID=Lus10025094.BGIv1.0 annot-version=v1.0
MASTGEGGGANEAEGERLDQMPAALLCTIMSKLDVGSICSIASTCRAFRASASHLFGFIPNFHLLRRSLKLDCERLDDAAISFVAQPSLQELCVHNCTDF
SGKLLSEIGGKCPDLRCLYLGSVAEKRGRAIHISDLEDLLSGCRQLEVRLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17020 F-box/RNI-like superfamily pro... Lus10025094
[exp]
0 1
AT5G60410 ATSIZ1, SIZ1 DNA-binding protein with MIZ/S... Lus10038464
[exp]
2.0 0.8572
AT3G20475 ATMSH5 MUTS-homologue 5 (.1) Lus10021545
[exp]
3.2 0.8731
AT1G68552 CPuORF53 conserved peptide upstream ope... Lus10034317
[exp]
3.2 0.8539
AT1G06410 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTH... Lus10029258
[exp]
5.3 0.8426
AT5G47360 Tetratricopeptide repeat (TPR)... Lus10019160
[exp]
7.4 0.8311
AT3G45830 unknown protein Lus10018121
[exp]
9.5 0.8606
AT4G24200 Transcription elongation facto... Lus10028515
[exp]
11.2 0.8440
AT5G49820 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein... Lus10038136
[exp]
11.8 0.8312
AT1G03090 MCCA methylcrotonyl-CoA carboxylase... Lus10022078
[exp]
12.5 0.8307
AT3G19190 ATATG2 autophagy 2 (.1) Lus10019868
[exp]
13.6 0.8588

Lus10025094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.